Gene

Ccdc3

Species
Rattus norvegicus
Symbol
Ccdc3
Name
coiled-coil domain containing 3
Synonyms
  • coiled-coil domain-containing protein 3
  • LOC498795
Biotype
protein coding gene
Automated Description
Predicted to be involved in negative regulation of metabolic process; negative regulation of tumor necrosis factor-mediated signaling pathway; and signal transduction. Predicted to act upstream of or within negative regulation of lipid biosynthetic process; positive regulation of fat cell differentiation; and positive regulation of lipid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in extracellular region. Orthologous to human CCDC3 (coiled-coil domain containing 3).
RGD Description
Predicted to be involved in several processes, including negative regulation of gene expression; negative regulation of lipid metabolic process; and negative regulation of tumor necrosis factor-mediated signaling pathway. Predicted to act upstream of or within negative regulation of lipid biosynthetic process; positive regulation of fat cell differentiation; and positive regulation of lipid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in extracellular region. Orthologous to human CCDC3 (coiled-coil domain containing 3); INTERACTS WITH (+)-schisandrin B; bisphenol A; dibutyl phthalate.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR31663
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensCCDC310 of 10YesYes  
Mus musculusCcdc39 of 9YesYes   
Xenopus tropicalisccdc38 of 9YesYes   
Danio rerioccdc3a9 of 9YesYes   
Danio rerioccdc3b3 of 9NoYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

No mapped variant information available
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051352.1:g.73056781T>Gvariant
SNP
  • intron variant
NC_051352.1:g.73060528T>Cvariant
SNP
  • intron variant
NC_051352.1:g.73060888G>Tvariant
SNP
  • intron variant
NC_051352.1:g.73042682C>Tvariant
SNP
  • intron variant
NC_051352.1:g.73043721T>Cvariant
SNP
  • intron variant
NC_051352.1:g.73047728T>Cvariant
SNP
  • intron variant
NC_051352.1:g.73047890A>Gvariant
SNP
  • intron variant
NC_051352.1:g.73048090G>Avariant
SNP
  • intron variant
NC_051352.1:g.73032914C>Avariant
SNP
  • 3 prime UTR variant
NC_051352.1:g.73054240A>Gvariant
SNP
  • intron variant
Showing 1 - 10 of 1,001 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
73.04M73.05M73.06M73.07M73.08M73.09M73.10M73.11M73.12M73.13M

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available