Gene

Clec18a

Species
Rattus norvegicus
Symbol
Clec18a
Name
C-type lectin domain family 18, member A
Synonyms
  • C-type lectin domain family 18 member A-like
  • LOC307851
Biotype
protein coding gene
Automated Description
Predicted to enable polysaccharide binding activity. Predicted to be active in extracellular space. Orthologous to several human genes including CLEC18A (C-type lectin domain family 18 member A).
RGD Description
Predicted to enable polysaccharide binding activity. Predicted to be active in extracellular space. Orthologous to several human genes including CLEC18A (C-type lectin domain family 18 member A); INTERACTS WITH alpha-Zearalanol; glyphosate; perfluorooctanoic acid.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR10334
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensCLEC18A10 of 10YesYes  
Homo sapiensCLEC18B9 of 10NoYes  
Homo sapiensCLEC18C9 of 10NoYes  
Mus musculusClec18a9 of 9YesYes   
Caenorhabditis elegansscl-212 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Crispld2139735263 of 9 
Crispld1240435253 of 9 
Pi15328541283 of 9 
R3hdml426343313 of 9 
Crisp2529239263 of 9 
Crisp1623246323 of 9 
Crisp3725443282 of 9 
Glipr1l1820347333 of 9 
Pi16924141322 of 9 
Glipr1l21021944283 of 9 
Glipr11119644333 of 9 
Glipr21217338243 of 9 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
39.040M39.042M39.044M39.046M39.048M39.050M39.052M39.054M39.056M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051354.1:g.39048099A>Gvariant
SNP
  • synonymous variant
NC_051354.1:g.39047026A>Cvariant
SNP
  • intron variant
NC_051354.1:g.39055111G>Avariant
SNP
  • intron variant
NC_051354.1:g.39055627T>Avariant
SNP
  • 5 prime UTR variant
NC_051354.1:g.39038853C>Tvariant
SNP
  • intron variant
NC_051354.1:g.39038926C>Gvariant
SNP
  • intron variant
NC_051354.1:g.39041532G>Tvariant
SNP
  • intron variant
NC_051354.1:g.39043543C>Avariant
SNP
  • intron variant
NC_051354.1:g.39044925A>Gvariant
SNP
  • intron variant
NC_051354.1:g.39045515A>Gvariant
SNP
  • intron variant
Showing 1 - 10 of 108 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
39.040M39.042M39.044M39.046M39.048M39.050M39.052M39.054M39.056MENSRNOT00000048900.6 (Clec18a)XM_006255612.5 (Clec18a)XM_039098244.2 (Clec18a)XM_039098245.2 (Clec18a)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available