Gene

Trim24

Species
Rattus norvegicus
Symbol
Trim24
Name
tripartite motif-containing 24
Synonyms
  • Ab2-427
  • LOC500084
Biotype
protein coding gene
Automated Description
Predicted to enable several functions, including estrogen response element binding activity; lysine-acetylated histone binding activity; and p53 binding activity. Involved in response to peptide hormone. Predicted to be located in cytoplasm; euchromatin; and nucleus. Orthologous to human TRIM24 (tripartite motif containing 24).
RGD Description
Predicted to enable several functions, including estrogen response element binding activity; lysine-acetylated histone binding activity; and p53 binding activity. Involved in response to peptide hormone. Predicted to be located in cytoplasm; euchromatin; and nucleus. Orthologous to human TRIM24 (tripartite motif containing 24); PARTICIPATES IN histone modification pathway; retinoic acid signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR45915
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensTRIM243 of 10YesYes  
Mus musculusTrim242 of 9YesYes   
Xenopus tropicalistrim242 of 9YesYes   
Xenopus tropicalisppp2r3b2 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Trim331111962482 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
66.58M66.60M66.62M66.64M66.66M66.68M66.70M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051339.1:g.66579497A>Gvariant
SNP
  • intron variant
NC_051339.1:g.66598371T>Avariant
SNP
  • intron variant
NC_051339.1:g.66600622T>Cvariant
SNP
  • intron variant
NC_051339.1:g.66581534A>Gvariant
SNP
  • intron variant
NC_051339.1:g.66582972A>Gvariant
SNP
  • intron variant
NC_051339.1:g.66606923A>Gvariant
SNP
  • intron variant
NC_051339.1:g.66607117C>Tvariant
SNP
  • intron variant
NC_051339.1:g.66607420G>Avariant
SNP
  • intron variant
NC_051339.1:g.66632705G>Avariant
SNP
  • intron variant
NC_051339.1:g.66646435C>Gvariant
SNP
  • intron variant
Showing 1 - 10 of 393 rows
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Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
66.58M66.60M66.62M66.64M66.66M66.68M66.70MENSRNOT00000047954.5 (Trim24)ENSRNOT00000099016.1 (Trim24)ENSRNOT00000113281.1 (Trim24)NM_001395753.1 (Trim24)ENSRNOT00000017909.8 (Svopl)XM_008762863.4 (Svopl)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

1 interactor gene based on 1 annotation
Trim24 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
Sumo3Rattus norvegicus
protein
  • affinity chromatography technology
PMID:22082260
Showing 1 - 1 of 1 rows
per page

Genetic Interactions

No data available