Gene

Ccdc177

Species
Rattus norvegicus
Symbol
Ccdc177
Name
coiled-coil domain containing 177
Synonyms
  • coiled-coil domain-containing protein 177
  • LOC500686
Biotype
protein coding gene
Automated Description
Orthologous to human CCDC177 (coiled-coil domain containing 177).
RGD Description
Orthologous to human CCDC177 (coiled-coil domain containing 177); INTERACTS WITH paracetamol; vinclozolin; 3-isobutyl-1-methyl-7H-xanthine (ortholog).
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR33663
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensCCDC17710 of 10YesYes  
Mus musculusCcdc1779 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Ccdc185165340232 of 9 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
100.405M100.406M100.407M100.408M100.409M100.410M100.411M100.412M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051341.1:g.100411575T>Cvariant
SNP
  • 5 prime UTR variant
NC_051341.1:g.100412596G>Avariant
SNP
  • 5 prime UTR variant
NC_051341.1:g.100404480C>Gvariant
SNP
  • 3 prime UTR variant
NC_051341.1:g.100411848G>Avariant
SNP
  • 5 prime UTR variant
NC_051341.1:g.100410213T>Cvariant
SNP
  • intron variant
NC_051341.1:g.100411632C>Avariant
SNP
  • 5 prime UTR variant
NC_051341.1:g.100404529G>Cvariant
SNP
  • 3 prime UTR variant
NC_051341.1:g.100404723T>Cvariant
SNP
  • 3 prime UTR variant
NC_051341.1:g.100406468G>Tvariant
SNP
  • 3 prime UTR variant
NC_051341.1:g.100407183G>Avariant
SNP
  • 3 prime UTR variant
Showing 1 - 10 of 21 rows
per page

Transgenic Alleles

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
100.405M100.406M100.407M100.408M100.409M100.410M100.411M100.412MENSRNOT00000040965.2 (Ccdc177)NM_001399190.1 (Ccdc177)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available