Gene

Krtap10-10l1

Species
Rattus norvegicus
Symbol
Krtap10-10l1
Name
keratin associated protein 10-10 like 1
Synonyms
  • hypothetical protein LOC365547
  • LOC365547
Biotype
protein coding gene
Automated Description
Orthologous to several human genes including KRTAP10-10 (keratin associated protein 10-10); KRTAP10-11 (keratin associated protein 10-11); and KRTAP10-5 (keratin associated protein 10-5).
RGD Description
Orthologous to several human genes including KRTAP10-10 (keratin associated protein 10-10); KRTAP10-11 (keratin associated protein 10-11); and KRTAP10-5 (keratin associated protein 10-5); INTERACTS WITH cadmium dichloride; indole-3-methanol; vinclozolin.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR23262
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensKRTAP10-108 of 10YesYes  
Homo sapiensKRTAP10-58 of 10YesYes  
Homo sapiensKRTAP10-118 of 10YesNo  
Homo sapiensKRTAP10-98 of 10YesNo  
Homo sapiensKRTAP10-37 of 10NoYes  
Homo sapiensKRTAP10-126 of 10NoYes  
Homo sapiensKRTAP10-85 of 10NoYes  
Mus musculusKrtap10-306 of 9YesNo   
Mus musculusKrtap10-43 of 9NoYes   
Mus musculusKrtap10-243 of 9NoYes   
Mus musculusKrtap10-103 of 9NoYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Krtap10-9130579788 of 9 
Krtap10-1228579788 of 9 
Krtap10-1l1326389877 of 9 
Krtap10-8427776755 of 9 
Krtap10-2529966617 of 9 
Krtap10l2617981774 of 9 
Krtap16-1733143373 of 9 
Krtap4-3823353473 of 9 
LOC100910814921750453 of 9 
Krtap1-11022645403 of 9 
Krtap1-31119551443 of 9 
Krtap4-7l11222747412 of 9 
Krtap5-81323842362 of 9 
Krtap31-11422741332 of 9 
Krtap31-21521342342 of 9 
Krtap12-2l11614649433 of 9 
Krtap12-41713251413 of 9 
Krtap12-21811756483 of 9 
Krtap12-11911854473 of 9 
Krtap2-12017740282 of 9 
Krtap12-1l12113251422 of 9 
Krtap1-5l12216038332 of 9 
Krtap1-52313738322 of 9 
LOC680428242 of 9 
Krtap9-7242 of 9 
Krtap9-1-ps1242 of 9 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
10.8242M10.8244M10.8246M10.8248M10.8250M10.8252M10.8254M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051355.1:g.10825494C>Gvariant
SNP
  • intron variant
NC_051355.1:g.10825115C>Tvariant
SNP
  • intron variant
NC_051355.1:g.10825203C>Avariant
SNP
  • intron variant
NC_051355.1:g.10824583G>Avariant
SNP
  • intron variant
NC_051355.1:g.10824875A>Gvariant
SNP
  • intron variant
NC_051355.1:g.10825283T>Avariant
SNP
  • intron variant
NC_051355.1:g.10825439A>Gvariant
SNP
  • intron variant
Showing 1 - 7 of 7 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
10.8242M10.8244M10.8246M10.8248M10.8250M10.8252M10.8254M

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available