Gene

Slbp

Species
Rattus norvegicus
Symbol
Slbp
Name
stem-loop histone mRNA binding protein
Synonyms
  • histone RNA hairpin-binding protein
  • LOC681062
Biotype
protein coding gene
Automated Description
Predicted to enable histone pre-mRNA stem-loop binding activity; identical protein binding activity; and mRNA binding activity. Predicted to be involved in cap-dependent translational initiation; mRNA 3'-end processing by stem-loop binding activity and cleavage; and mRNA transport. Predicted to be located in cytosol; nucleolus; and nucleoplasm. Predicted to be part of histone mRNA stem-loop binding activity complex and histone pre-mRNA 3'end processing complex. Predicted to be active in cytoplasm. Orthologous to human SLBP (stem-loop histone mRNA binding protein).
RGD Description
Predicted to enable histone pre-mRNA stem-loop binding activity; identical protein binding activity; and mRNA binding activity. Predicted to be involved in cap-dependent translational initiation; mRNA 3'-end processing by stem-loop binding activity and cleavage; and mRNA transport. Predicted to be located in cytosol; nucleolus; and nucleoplasm. Predicted to be part of histone mRNA stem-loop binding activity complex and histone pre-mRNA 3'end processing complex. Predicted to be active in cytoplasm. Orthologous to human SLBP (stem-loop histone mRNA binding protein); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR17408
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensSLBP10 of 10YesYes  
Mus musculusSlbp9 of 9YesYes   
Xenopus tropicalisslbp9 of 9YesYes   
Danio rerioslbp9 of 9YesYes   
Drosophila melanogasterSlbp6 of 9YesYes   
Caenorhabditis eleganscdl-16 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Slbpl114957426 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
77.072M77.073M77.074M77.075M77.076M77.077M77.078M77.079M77.080M77.081M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051349.1:g.77074177G>Avariant
SNP
  • intron variant
NC_051349.1:g.77076667G>Tvariant
SNP
  • intron variant
NC_051349.1:g.77078053C>Gvariant
SNP
  • intron variant
NC_051349.1:g.77081421C>Gvariant
SNP
  • 3 prime UTR variant
NC_051349.1:g.77073232A>Gvariant
SNP
  • intron variant
NC_051349.1:g.77077315G>Tvariant
SNP
  • intron variant
NC_051349.1:g.77081227C>Gvariant
SNP
  • 3 prime UTR variant
NC_051349.1:g.77071824C>Gvariant
SNP
  • intron variant
NC_051349.1:g.77074831T>Cvariant
SNP
  • intron variant
NC_051349.1:g.77076124C>Tvariant
SNP
  • intron variant
Showing 1 - 10 of 29 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
77.072M77.073M77.074M77.075M77.076M77.077M77.078M77.079M77.080M77.081MENSRNOT00000040229.4 (Slbp)ENSRNOT00000096081.1 (Slbp)NM_001130988.1 (Slbp)XM_039092440.2 (Slbp)

Sequence Details

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Expression

Primary Sources
None
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available