Gene

Tcea1l1

Species
Rattus norvegicus
Symbol
Tcea1l1
Name
transcription elongation factor A1-like 1
Synonyms
  • AABR07017110.1
  • LOC498453
Biotype
pseudogene
Automated Description
Orthologous to human TCEA1 (transcription elongation factor A1).
RGD Description
Orthologous to human TCEA1 (transcription elongation factor A1).
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensTCEA19 of 10YesNo  
Mus musculusTcea19 of 9YesYes   
Xenopus tropicalistcea13 of 9YesNo   
Danio reriotcea18 of 9YesYes   
Drosophila melanogasterTfIIS9 of 9YesYes   
Drosophila melanogasterCG81173 of 9NoYes   
Caenorhabditis elegansT24H10.18 of 9YesNo   
Saccharomyces cerevisiaeDST18 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Tcea3134769546 of 9 
Tcea2228679656 of 9 
Tceanc335447302 of 9 
Dido1430340242 of 9 
Phf3521048282 of 9 
Tceanc2621039262 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
10.4010M10.4012M10.4014M10.4016M10.4018M10.4020M10.4022M10.4024M10.4026M10.4028M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051350.1:g.10400956T>Avariant
SNP
  • 5 prime UTR variant
NC_051350.1:g.10401899T>Cvariant
SNP
  • synonymous variant
NC_051350.1:g.10400888G>Avariant
SNP
  • 5 prime UTR variant
NC_051350.1:g.10401097G>Avariant
SNP
  • 5 prime UTR variant
NC_051350.1:g.10401976G>Avariant
SNP
  • missense variant
NC_051350.1:g.10401613A>Tvariant
SNP
  • missense variant
NC_051350.1:g.10401670A>Gvariant
SNP
  • missense variant
Showing 1 - 7 of 7 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
10.4010M10.4012M10.4014M10.4016M10.4018M10.4020M10.4022M10.4024M10.4026M10.4028M

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions