Species

Rattus norvegicus

Symbol

Tktl1

Name

transketolase-like 1

Synonyms

LOC103689980
LOC689374

Biotype

protein coding gene

Automated Description

Predicted to enable thiamine pyrophosphate binding activity and transketolase activity. Predicted to be located in cytosol. Orthologous to human TKTL1 (transketolase like 1).

RGD Description

Predicted to enable thiamine pyrophosphate binding activity and transketolase activity. Predicted to be located in cytosol. Orthologous to human TKTL1 (transketolase like 1); PARTICIPATES IN pentose phosphate pathway; INTERACTS WITH acrylamide; bisphenol A; copper atom.

Cross References

Additional Information

Literature

Orthology

Gene tree: PANTHER:PTHR43195

Stringency:StringentModerateNo filter

Additional filters to further constrain the results:

Best Score OnlyBest Reverse Score Only

Count:Species:Methods:

Species	Gene symbol	Count	Best	Best reverse	Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiens	TKTL1	5 of 10	Yes	Yes	☑☑☐☐☐☑☐☑☑☐
Mus musculus	Tktl1	9 of 9	Yes	Yes	☑ ☑☑☑☑☑☑☑☑
Xenopus tropicalis	tktl2	3 of 9	Yes	No	☐ ☐☐☐☑☐☑☑☐
Danio rerio	tktb	3 of 9	Yes	No	☐ ☐☐☐☑☐☑☑☐
Drosophila melanogaster	Tkt	7 of 9	Yes	No	☑ ☐☑☑☑☐☑☑☑
Drosophila melanogaster	CG5103	7 of 9	Yes	No	☑ ☐☑☑☑☐☑☑☑
Caenorhabditis elegans	tkt-1	7 of 9	Yes	No	☑ ☐☑☑☑☐☑☑☑
Saccharomyces cerevisiae S288C	TKL2	5 of 9	Yes	Yes	☑ ☑☑☐☐☑☐☐☑
Saccharomyces cerevisiae S288C	TKL1	5 of 9	Yes	Yes	☑ ☑☑☐☐☑☐☐☑

Links to orthology data in JBrowse by filter level: Stringent, Moderate, No filter, Best and Best Reverse

Paralogy

Gene symbol	Rank	Alignment Length (aa)	Similarity %	Identity %	Method Count	Method Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Tktl2	1	626	79	66	7 of 9	☑☐☑☐☑☑☑☑☑
Tkt	2	614	72	57	7 of 9	☑☐☑☐☑☑☑☑☑
Pdhb	3	379	36	22	2 of 9	☑☐☐☐☐☐☐☑☐
Bckdhb	4	311	35	23	2 of 9	☑☐☐☐☐☐☐☑☐

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources: None
Other Sources: None

No data available

Disease Associations

Must provide at least one subject

Cell color indicative of annotation volume

Species	Gene	Association	Disease Qualifier	Disease	Evidence	Source	Based On	References
No records match query. Try removing filters.

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Alleles and Variants

Genome location

ChrX:151954175...151987208 + (33.03 kb)

Assembly version

mRatBN7.2

Viewer Help

Data currently unavailable; sequence viewer under construction

Allele/Variant Symbol	Category	Variant
NC_051356.1:g.151971644G>C	variant	NC_051356.1:g.151971644G>C SNP intron variant
NC_051356.1:g.151956737A>G	variant	NC_051356.1:g.151956737A>G SNP intron variant
NC_051356.1:g.151971646C>T	variant	NC_051356.1:g.151971646C>T SNP intron variant
NC_051356.1:g.151971654T>G	variant	NC_051356.1:g.151971654T>G SNP intron variant
NC_051356.1:g.151960761G>T	variant	NC_051356.1:g.151960761G>T SNP intron variant
NC_051356.1:g.151982566T>G	variant	rs3323699641 SNP intron variant
NC_051356.1:g.151978970A>T	variant	NC_051356.1:g.151978970A>T SNP intron variant
NC_051356.1:g.151959706G>A	variant	NC_051356.1:g.151959706G>A SNP intron variant
NC_051356.1:g.151959750C>T	variant	NC_051356.1:g.151959750C>T SNP intron variant
NC_051356.1:g.151978883G>A	variant	NC_051356.1:g.151978883G>A SNP intron variant

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View detailed Alleles/Variants information

Download all Alleles/Variants for all genes of the species

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location

ChrX:151954175...151987208 + (33.03 kb)

Assembly version

mRatBN7.2

Viewer Help

Data currently unavailable; sequence viewer under construction

Sequence Details

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Expression

Primary Sources

None

Other Sources

Must provide at least one subject

Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available