Gene

Znhit1

Species
Rattus norvegicus
Symbol
Znhit1
Name
zinc finger, HIT-type containing 1
Synonyms
  • LOC100360077
  • LOC360784
Biotype
protein coding gene
Automated Description
Predicted to enable histone binding activity; histone deacetylase binding activity; and nucleosome binding activity. Predicted to be involved in several processes, including hematopoietic stem cell homeostasis; intestinal stem cell homeostasis; and positive regulation of macromolecule biosynthetic process. Predicted to act upstream of or within negative regulation of G0 to G1 transition; negative regulation of transcription by RNA polymerase II; and regulation of T cell proliferation. Predicted to be located in nucleoplasm. Predicted to be part of Swr1 complex. Orthologous to human ZNHIT1 (zinc finger HIT-type containing 1).
RGD Description
Predicted to enable histone binding activity; histone deacetylase binding activity; and nucleosome binding activity. Predicted to be involved in several processes, including hematopoietic stem cell homeostasis; intestinal stem cell homeostasis; and positive regulation of macromolecule biosynthetic process. Predicted to act upstream of or within negative regulation of G0 to G1 transition; negative regulation of transcription by RNA polymerase II; and regulation of T cell proliferation. Predicted to be located in nucleoplasm. Predicted to be part of Swr1 complex. Orthologous to human ZNHIT1 (zinc finger HIT-type containing 1); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; p53 signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 2,4-dinitrotoluene.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR13093
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensZNHIT110 of 10YesYes  
Mus musculusZnhit19 of 9YesYes   
Xenopus tropicalisznhit15 of 9YesYes   
Danio rerioznhit19 of 9YesYes   
Drosophila melanogasterCG319179 of 9YesYes   
Caenorhabditis eleganszhit-19 of 9YesYes   
Saccharomyces cerevisiaeVPS713 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
19.687M19.688M19.689M19.690M19.691M19.692M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051347.1:g.19687683C>Tvariant
SNP
  • intron variant
NC_051347.1:g.19687870C>Tvariant
SNP
  • intron variant
NC_051347.1:g.19686652C>Tvariant
SNP
  • 5 prime UTR variant
NC_051347.1:g.19687117T>Avariant
SNP
  • intron variant
NC_051347.1:g.19687249A>Tvariant
SNP
  • intron variant
NC_051347.1:g.19688956G>Avariant
SNP
  • intron variant
NC_051347.1:g.19690257A>Tvariant
SNP
  • intron variant
NC_051347.1:g.19690258A>Tvariant
SNP
  • intron variant
NC_051347.1:g.19690269T>Cvariant
SNP
  • intron variant
NC_051347.1:g.19691351G>Avariant
SNP
  • intron variant
Showing 1 - 10 of 52 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
19.687M19.688M19.689M19.690M19.691M19.692MENSRNOT00000040015.6 (Znhit1)ENSRNOT00000077293.2 (Znhit1)NM_001271350.1 (Znhit1)XM_006249091.5 (Znhit1)ENSRNOT00000054459.3 (Mir702)NR_037384.1 (Mir702)ENSRNOT00000001921.5 (Plod3)ENSRNOT00000111361.1 (Plod3)NM_178101.3 (Plod3)ENSRNOT00000041808.3 (Vgf)Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.Maximum features displayed. See full view for more.

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available