Gene

Rps10l1

Species
Rattus norvegicus
Symbol
Rps10l1
Name
ribosomal protein S10-like 1
Synonyms
  • 40S ribosomal protein S10
  • LOC100363439
Biotype
pseudogene
Automated Description
Predicted to be located in nucleolus. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 9. Orthologous to human RPS10 (ribosomal protein S10).
RGD Description
Predicted to be located in nucleolus. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 9. Orthologous to human RPS10 (ribosomal protein S10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; cadmium dichloride.
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensRPS106 of 10YesNo  
Mus musculusRps109 of 9YesYes   
Xenopus tropicalisrps104 of 9YesYes   
Danio reriorps107 of 9YesYes   
Drosophila melanogasterRpS10b8 of 9YesYes   
Drosophila melanogasterRpS10a8 of 9YesYes   
Caenorhabditis elegansrps-108 of 9YesYes   
Saccharomyces cerevisiaeRPS10A7 of 9YesYes   
Saccharomyces cerevisiaeRPS10B6 of 9NoYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Rps1011651001006 of 9 
Rps10l2316590877 of 9 
Rps10-ps22415992916 of 9 
Rps10l7516599982 of 9 
Rps10l6616397962 of 9 
Rps10-ps21716594912 of 9 
Plec816756502 of 9 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
72.03090M72.03095M72.03100M72.03105M72.03110M72.03115M72.03120M72.03125M72.03130M72.03135M72.03140M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051341.1:g.72031091T>Cvariant
SNP
  • synonymous variant
NC_051341.1:g.72031356G>Avariant
SNP
  • missense variant
Showing 1 - 2 of 2 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
72.03090M72.03095M72.03100M72.03105M72.03110M72.03115M72.03120M72.03125M72.03130M72.03135M72.03140MENSRNOT00000043250.6 (Rps10l1)XM_002729623.3 (Rps10l1)ENSRNOT00000043250.6 (Rps10)

Sequence Details

Transcript: Mode:

Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available