Gene

Ccdc127

Species
Rattus norvegicus
Symbol
Ccdc127
Name
coiled-coil domain containing 127
Synonyms
  • coiled-coil domain-containing protein 127
  • MGC73017
Biotype
protein coding gene
Automated Description
Predicted to be located in mitochondrion. Orthologous to human CCDC127 (coiled-coil domain containing 127).
RGD Description
Predicted to be located in mitochondrion. Orthologous to human CCDC127 (coiled-coil domain containing 127); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR31958
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensCCDC12710 of 10YesYes  
Mus musculusCcdc1279 of 9YesYes   
Xenopus tropicalisccdc1279 of 9YesYes   
Danio rerioccdc127a9 of 9YesYes   
Danio rerioccdc127b9 of 9YesYes   
Danio reriozmp:00000009309 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
28.929M28.930M28.931M28.932M28.933M28.934M28.935M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051336.1:g.28934518C>Tvariant
SNP
  • intron variant
NC_051336.1:g.28928642C>Tvariant
SNP
  • 3 prime UTR variant
NC_051336.1:g.28933241G>Cvariant
SNP
  • intron variant
NC_051336.1:g.28935818G>Avariant
SNP
  • 5 prime UTR variant
NC_051336.1:g.28935220T>Avariant
SNP
  • intron variant
NC_051336.1:g.28935232T>Avariant
SNP
  • intron variant
NC_051336.1:g.28935226T>Avariant
SNP
  • intron variant
NC_051336.1:g.28928670C>Tvariant
SNP
  • 3 prime UTR variant
NC_051336.1:g.28929796T>Gvariant
SNP
  • 3 prime UTR variant
NC_051336.1:g.28931139G>Avariant
SNP
  • intron variant
Showing 1 - 10 of 28 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
28.929M28.930M28.931M28.932M28.933M28.934M28.935MENSRNOT00000098265.1 (Ccdc127)NM_198766.2 (Ccdc127)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available