Gene

LOC103691261

Species
Rattus norvegicus
Symbol
LOC103691261
Name
sperm flagellar protein 1-like
Synonyms
  • LOC680693
  • similar to Sperm flagellar protein 1
Biotype
protein coding gene
Automated Description
Predicted to enable microtubule binding activity. Predicted to be involved in regulation of cytoskeleton organization. Predicted to be active in axoneme.
RGD Description
Predicted to enable microtubule binding activity. Predicted to be involved in regulation of cytoskeleton organization. Predicted to be active in axoneme.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR12509
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Mus musculusSpef1l9 of 9YesYes   
Danio reriospef13 of 9YesNo   
Drosophila melanogasterCG167194 of 9YesYes   
Drosophila melanogasterCG123954 of 9YesNo   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Spef1128852367 of 9 
Spata4214642303 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
194.770M194.771M194.772M194.773M194.774M194.775M194.776M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051336.1:g.194775413C>Tvariant
SNP
  • intron variant
NC_051336.1:g.194771133A>Gvariant
SNP
  • intron variant
NC_051336.1:g.194772153T>Gvariant
SNP
  • intron variant
NC_051336.1:g.194770370G>Avariant
SNP
  • 3 prime UTR variant
NC_051336.1:g.194776446C>Tvariant
SNP
  • 3 prime UTR variant
NC_051336.1:g.194773483T>Cvariant
SNP
  • intron variant
NC_051336.1:g.194775725T>Cvariant
SNP
  • intron variant
NC_051336.1:g.194769820C>Tvariant
SNP
  • 3 prime UTR variant
NC_051336.1:g.194770805G>Tvariant
SNP
  • intron variant
Showing 1 - 9 of 9 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
194.770M194.771M194.772M194.773M194.774M194.775M194.776M

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available