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Date: Fri Dec 13 2024
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YNCI0008C
Saccharomyces cerevisiae
SGD:S000006534
Summary
Orthology
Paralogy
Function - GO Annotations
Pathways
Phenotypes
Disease Associations
Alleles and Variants
Transgenic Alleles
Models
Sequence Feature Viewer
Sequence Details
Expression
Molecular Interactions
Genetic Interactions
Gene
YNCI0008C
Species
Saccharomyces cerevisiae
Symbol
YNCI0008C
Name
Not Available
Synonyms
tD(GUC)I1
tRNA-Asp
Show All 3
Biotype
tRNA gene
Automated Description
Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translational elongation. Predicted to be located in cytosol.
SGD Description
Aspartate tRNA (tRNA-Asp), predicted by tRNAscan-SE analysis
Cross References
NCBI_Gene:854798
Additional Information
Literature
Orthology
Gene tree
Not Available
No data available
Links to orthology data in JBrowse by filter level:
Stringent
,
Moderate
,
No filter
,
Best and Best Reverse
Paralogy
No paralogs for the gene.
Function - GO Annotations
Compare ortholog genes
Stringency: Stringent
Stringent
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Species
All vertebrates
All invertebrates
Homo sapiens
Mus musculus
Rattus norvegicus
Xenopus laevis
Xenopus tropicalis
Danio rerio
Drosophila melanogaster
Caenorhabditis elegans
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Show functions with at least one experimental evidence
No function available for that gene
Pathways
Reactome Pathway (0)
Reactome Reactions (0)
GO-CAMs (0)
No data available
No data available
No data available
Read more about the
GO-CAM Data Model
.
Phenotypes
Primary Sources
SGD
Other Sources
None
No data available
Disease Associations
Compare ortholog genes
Stringency: Stringent
Stringent
Moderate
No filter
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Species
All vertebrates
All invertebrates
Homo sapiens
Mus musculus
Rattus norvegicus
Xenopus laevis
Xenopus tropicalis
Danio rerio
Drosophila melanogaster
Caenorhabditis elegans
Clear
Include negative annotations
Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Alleles and Variants
No data available
Download all Alleles/Variants for all genes of the species
Transgenic Alleles
No data available
Models
No data available
Sequence Feature Viewer
Genome location
ChrIX:324303...324374
- (0.07 kb)
Assembly version
R64-5-1
Viewer Help
324.31k
324.32k
324.33k
324.34k
324.35k
324.36k
324.37k
YNCI0008C_tRNA (YNCI0008C)
Sequence Details
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Expression
Primary Sources
None
Other Sources
Single Cell Expression Atlas
Compare ortholog genes
Stringency: Stringent
Stringent
Moderate
No filter
Clear
Species
All vertebrates
All invertebrates
Homo sapiens
Mus musculus
Rattus norvegicus
Xenopus laevis
Xenopus tropicalis
Danio rerio
Drosophila melanogaster
Caenorhabditis elegans
Clear
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.
Molecular Interactions
2 interactor genes
based on
2 annotations
Sort by
Default
YNCI0008C molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection method
YNCI0008C
molecule type
protein
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Interactor gene
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Interactor species
Saccharomyces cerevisiae
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Interactor molecule type
RNA
protein
Clear
Detection methods
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Source
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Reference
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protein
DPS1
Saccharomyces cerevisiae
protein
enzymatic study
biogrid:616494
PMID:12486031
protein
YDR341C
Saccharomyces cerevisiae
RNA
unspecified method
biogrid:344652
PMID:8890180
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Genetic Interactions
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