Gene

msp-55

Species
Caenorhabditis elegans
Symbol
msp-55
Name
Major Sperm Protein 55
Synonyms
  • C09B9.6
  • CELE_C09B9.6
Biotype
protein coding gene
Automated Description
Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Is expressed in gonad; oocyte; and sperm.
WB Description
msp-55 encodes a member of the major sperm protein family.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR22920
Stringency:
Additional filters to further constrain the results:
No ortholog matching your filter. Please try a less stringent filter.
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
msp-78112799984 of 8  
msp-3112799984 of 8  
Y59H11AM.1112799984 of 8  
msp-33212798984 of 8  
msp-152212798984 of 8  
msp-63212798984 of 8  
msp-49212798984 of 8  
msp-38312798984 of 8  
msp-32411899994 of 8  
msp-40512799993 of 8  
msp-79612798983 of 8  
Y59E9AR.7712699993 of 8  
msp-76812798983 of 8  
msp-19912799992 of 8  
msp-771012798982 of 8  
Y59E9AR.11112699992 of 8  
msp-101212798982 of 8  
M199.21313078674 of 8  
Y105C5B.191413077664 of 8  
ZK1248.171510675694 of 8  
Y116A8A.71612468504 of 8  
Y116A8A.21612468504 of 8  
Y50E8A.2178587844 of 8  
msp-7418771001003 of 8  
msp-581977100993 of 8  
C36H8.12013055394 of 8  
Y53C10A.152112545222 of 8  
B0496.62213337222 of 8  
C25A8.1237442412 of 8  
T10E9.6241456432 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
5.05565M5.05570M5.05575M5.05580M5.05585M5.05590M5.05595M5.05600M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003282.8:g.5055753C>Tvariant
SNP
  • missense variant
NC_003282.8:g.5055822G>Avariant
SNP
  • missense variant
NC_003282.8:g.5055897G>Avariant
SNP
  • missense variant
NC_003282.8:g.5055655G>Avariant
SNP
  • synonymous variant
NC_003282.8:g.5055779G>Avariant
SNP
  • missense variant
Showing 1 - 5 of 5 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
5.05565M5.05570M5.05575M5.05580M5.05585M5.05590M5.05595M5.05600M

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

3 interactor genes based on 3 annotations
msp-55 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
actl-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:32350248
protein
pik-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:32350248
protein
ubq-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:34321666
Showing 1 - 3 of 3 rows
per page

Genetic Interactions

No data available