Gene

nhr-16

Species
Caenorhabditis elegans
Symbol
nhr-16
Name
Nuclear Hormone Receptor family 16
Synonyms
  • CELE_T12C9.6
  • T12C9.6
Biotype
protein coding gene
Automated Description
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
WB Description
nhr-16 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR46011
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
4.4390M4.4392M4.4394M4.4396M4.4398M4.4400M4.4402M4.4404M4.4406M4.4408M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003280.10:g.4439228C>Tvariant
SNP
  • intron variant
NC_003280.10:g.4440692C>Tvariant
SNP
  • missense variant
NC_003280.10:g.4439808G>Avariant
SNP
  • splice region variant
NC_003280.10:g.4440295G>Avariant
SNP
  • intron variant
NC_003280.10:g.4440657T>Avariant
SNP
  • missense variant
NC_003280.10:g.4439190T>Cvariant
SNP
  • intron variant
NC_003280.10:g.4439353G>Avariant
SNP
  • intron variant
NC_003280.10:g.4439360A>Gvariant
SNP
  • intron variant
NC_003280.10:g.4439458C>Tvariant
SNP
  • missense variant
NC_003280.10:g.4439759C>Tvariant
SNP
  • missense variant
Showing 1 - 10 of 27 rows
per page

Transgenic Alleles

No data available

Models

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
4.4390M4.4392M4.4394M4.4396M4.4398M4.4400M4.4402M4.4404M4.4406M4.4408M

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

Genetic Interactions

No data available