Gene

ssp-10

Species
Caenorhabditis elegans
Symbol
ssp-10
Name
Sperm Specific family, class P 10
Synonyms
  • CELE_K07F5.9
  • K07F5.9
Biotype
protein coding gene
Automated Description
Not Available
WB Description
Enriched in PVT; amphid sheath cell; germ line; sperm; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including mut-16; nuo-6; and atfs-1 based on RNA-seq; microarray; and proteomic studies. Is affected by thirty chemicals including hydrogen sulfide; Ethanol; and methylmercury hydroxide based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: Sperm-specific class P; MSP (Major sperm protein) domain; Immunoglobulin-like fold; PapD-like superfamily; Major sperm protein (MSP) domain; and Phosphorylation site.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR22947
Stringency:
Additional filters to further constrain the results:
No ortholog matching your filter. Please try a less stringent filter.
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
ssp-111109100994 of 8  
ssp-91109100994 of 8  
ssp-16210999964 of 8  
ssp-19310996944 of 8  
msd-1410996914 of 8  
msd-4510996913 of 8  
msd-2510996913 of 8  
msd-3510996913 of 8  
ssp-37611168624 of 8  
ssp-33710665514 of 8  
ssp-31810664494 of 8  
ssp-36910663474 of 8  
ssp-351010563484 of 8  
ssp-321110164494 of 8  
ssp-341210559444 of 8  
ZK1307.31311156354 of 8  
ZK1307.41311156354 of 8  
C34D4.3148761434 of 8  
F21H7.51510648324 of 8  
F36D3.41510648324 of 8  
W01B6.4166964594 of 8  
C01G10.14179853324 of 8  
melo-3189851304 of 8  
F58A3.41911653313 of 8  
K07F5.7208853314 of 8  
D2007.22111048313 of 8  
M03E7.1229255363 of 8  
F53B6.4237857403 of 8  
F36H12.32410852352 of 8  
C35E7.92510751362 of 8  
F13A7.1269249303 of 8  
F42A9.7278845343 of 8  
C10H11.72810543322 of 8  
K08E3.2298554392 of 8  
W03D8.5307854332 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
9.85075M9.85080M9.85085M9.85090M9.85095M9.85100M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003282.8:g.9850856T>Cvariant
SNP
  • missense variant
NC_003282.8:g.9850841C>Tvariant
SNP
  • missense variant
NC_003282.8:g.9850921T>Cvariant
SNP
  • synonymous variant
NC_003282.8:g.9850966C>Tvariant
SNP
  • synonymous variant
Showing 1 - 4 of 4 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
9.85075M9.85080M9.85085M9.85090M9.85095M9.85100M

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

1 interactor gene based on 1 annotation
ssp-10 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
ubq-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:34321666
Showing 1 - 1 of 1 rows
per page

Genetic Interactions

No data available