Gene

srb-17

Species
Caenorhabditis elegans
Symbol
srb-17
Name
Serpentine Receptor, class B (beta) 17
Synonyms
  • CELE_F01D4.7
  • F01D4.7
Biotype
protein coding gene
Automated Description
Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in sensory perception of chemical stimulus. Predicted to be located in membrane. Is expressed in chemosensory neurons; head muscle; intestine; seam cell; and vulva.
WB Description
Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in sensory perception of chemical stimulus. Predicted to be located in membrane. Expressed in chemosensory neurons; head muscle; intestine; seam cell; and vulva.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR31216
No data available
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
srb-3134647273 of 8  
srb-5236244243 of 8  
srb-13335543253 of 8  
srb-1434144263 of 8  
srb-12534744233 of 8  
srb-11634144243 of 8  
srb-15733745233 of 8  
srb-6832447233 of 8  
srb-16933747252 of 8  
srb-8103 of 8  
srb-7103 of 8  
srb-2103 of 8  
srb-9112 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
10.4545M10.4550M10.4555M10.4560M10.4565M10.4570M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003282.8:g.10454957T>Gvariant
SNP
  • intron variant
NC_003282.8:g.10455493A>Tvariant
SNP
  • missense variant
NC_003282.8:g.10455893T>Gvariant
SNP
  • intron variant
NC_003282.8:g.10456632G>Avariant
SNP
  • missense variant
NC_003282.8:g.10455612C>Tvariant
SNP
  • splice donor variant
NC_003282.8:g.10456762A>Cvariant
SNP
  • intron variant
NC_003282.8:g.10454324T>Cvariant
SNP
  • 3 prime UTR variant
NC_003282.8:g.10456949C>Tvariant
SNP
  • intron variant
NC_003282.8:g.10456146G>Avariant
SNP
  • synonymous variant
NC_003282.8:g.10456873A>Tvariant
SNP
  • intron variant
Showing 1 - 10 of 32 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
10.4545M10.4550M10.4555M10.4560M10.4565M10.4570MF01D4.7.1 (srb-17)

Sequence Details

Transcript: Mode:
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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available