Gene

slc-25A42

Species
Caenorhabditis elegans
Symbol
slc-25A42
Name
SLC (SoLute Carrier) homolog 25A42
Synonyms
  • CELE_F43G9.3
  • F43G9.3
Biotype
protein coding gene
Automated Description
Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is expressed in body wall musculature; head; intestine; and pharynx. Orthologous to human SLC25A42 (solute carrier family 25 member 42).
WB Description
Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Expressed in head. Is an ortholog of human SLC25A42 (solute carrier family 25 member 42).
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR24089
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensSLC25A429 of 9YesYes   
Mus musculusSlc25a429 of 9YesYes   
Rattus norvegicusSlc25a428 of 9YesYes   
Xenopus tropicalisslc25a429 of 9YesYes   
Danio rerioslc25a429 of 9YesYes   
Drosophila melanogasterDPCoAC9 of 9YesYes   
Saccharomyces cerevisiaeLEU52 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
F17E5.2129454333 of 8  
F55A11.4229651313 of 8  
hpo-12329943253 of 8  
slc-25A26430742262 of 8  
K11H3.3529343282 of 8  
T10F2.2628746272 of 8  
ant-1.1728246282 of 8  
slc-25A32829544272 of 8  
C16C10.1932738242 of 8  
R07E3.41028643282 of 8  
dif-11126844282 of 8  
slc-25A211219940302 of 8  
slc-25A291318646272 of 8  
T20D3.51416046242 of 8  
Y37B11A.31511147342 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
8.6128M8.6130M8.6132M8.6134M8.6136M8.6138M8.6140M8.6142M8.6144M8.6146M8.6148M8.6150M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003279.8:g.8614612G>Avariant
SNP
  • missense variant
NC_003279.8:g.8613167G>Avariant
SNP
  • synonymous variant
NC_003279.8:g.8613683A>Gvariant
SNP
  • intron variant
NC_003279.8:g.8613715A>Tvariant
SNP
  • intron variant
NC_003279.8:g.8613157G>Avariant
SNP
  • missense variant
NC_003279.8:g.8613786C>Tvariant
SNP
  • missense variant
NC_003279.8:g.8613358G>Avariant
SNP
  • intron variant
NC_003279.8:g.8613612A>Tvariant
SNP
  • intron variant
NC_003279.8:g.8613714C>Tvariant
SNP
  • intron variant
NC_003279.8:g.8613645T>Gvariant
SNP
  • intron variant
Showing 1 - 10 of 22 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
8.6128M8.6130M8.6132M8.6134M8.6136M8.6138M8.6140M8.6142M8.6144M8.6146M8.6148M8.6150MF43G9.3.1 (slc-25A42)F43G9.3.2 (slc-25A42)

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available