Version: 8.0.0
Date: Tue Jan 28 2025
rabi-1
Caenorhabditis elegansWB:WBGene00010045
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

rabi-1

Species
Caenorhabditis elegans
Symbol
rabi-1
Name
RABIn8 homolog 1
Synonyms
  • CELE_F54C9.11
  • F54C9.11
Biotype
protein coding gene
Automated Description
Predicted to enable guanyl-nucleotide exchange factor activity. Is expressed in hypodermis; vulA; vulB1; vulB2; and vulval muscle. Orthologous to human RAB3IP (RAB3A interacting protein) and RAB3IL1 (RAB3A interacting protein like 1).
WB Description
Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in exocytosis. Predicted to be located in Golgi to plasma membrane transport vesicle. Expressed in hypodermis; vulA; vulB1; vulB2; and vulval muscle. Is an ortholog of human RAB3IL1 (RAB3A interacting protein like 1) and RAB3IP (RAB3A interacting protein).
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR14430
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensRAB3IL19 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Homo sapiensRAB3IP9 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Mus musculusRab3il19 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Mus musculusRab3ip7 of 9NoYes☑ ☑☑☐☑☑☑☐☑  
Rattus norvegicusRab3il19 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Rattus norvegicusRab3ip9 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Xenopus tropicalisrab3il19 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Xenopus tropicalisrab3ip9 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Danio reriorab3il19 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Danio reriorab3ip9 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Saccharomyces cerevisiaeSEC23 of 9YesYes☑ ☐☐☐☑☐☑☐☐  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
8.5832M8.5834M8.5836M8.5838M8.5840M8.5842M8.5844M8.5846M8.5848M8.5850M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
tm2518allele with one associated variant
deletion
  • splice acceptor variant
NC_003280.10:g.8583675A>Gvariant
SNP
  • synonymous variant
NC_003280.10:g.8584124G>Avariant
SNP
  • missense variant
NC_003280.10:g.8584457T>Cvariant
SNP
  • synonymous variant
NC_003280.10:g.8584975C>Tvariant
SNP
  • splice region variant
NC_003280.10:g.8584414C>Tvariant
SNP
  • missense variant
NC_003280.10:g.8583704C>Tvariant
SNP
  • missense variant
NC_003280.10:g.8584541C>Tvariant
SNP
  • synonymous variant
NC_003280.10:g.8583206G>Avariant
SNP
  • missense variant
NC_003280.10:g.8584006C>Tvariant
SNP
  • missense variant
Showing 1 - 10 of 23 rows
per page
View detailed Alleles/Variants information
Download all Alleles/Variants for all genes of the species

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
8.5832M8.5834M8.5836M8.5838M8.5840M8.5842M8.5844M8.5846M8.5848M8.5850MF54C9.11.1 (F54C9.11)F54C9.10.1 (arl-1)

Sequence Details

Transcript: Mode:

Expression

Primary Sources
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
rabi-1 (Cel)
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

10 interactor genes based on 16 annotations
rabi-1 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
eps-8Caenorhabditis elegans
protein
  • two hybrid
PMID:23549480
protein
F19C7.8Caenorhabditis elegans
protein
  • two hybrid
PMID:23549480
protein
gad-1Caenorhabditis elegans
protein
  • two hybrid
PMID:19123269
protein
inso-1Caenorhabditis elegans
protein
  • two hybrid
PMID:14704431
protein
lin-10Caenorhabditis elegans
protein
  • two hybrid
PMID:21110867
protein
M01F1.8Caenorhabditis elegans
protein
  • two hybrid
PMID:19123269
protein
rab-8Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:33092268
protein
rab-8Caenorhabditis elegans
protein
  • imaging technique
PMID:33092268
protein
rpy-1Caenorhabditis elegans
protein
  • two hybrid
PMID:14704431
protein
rpy-1Caenorhabditis elegans
protein
  • two hybrid
PMID:14704431
Showing 1 - 10 of 16 rows
per page

Genetic Interactions

No data available