Gene

B0348.2

Species
Caenorhabditis elegans
Symbol
B0348.2
Name
LITAF domain-containing protein
Synonyms
  • CELE_B0348.2
Biotype
protein coding gene
Automated Description
Predicted to enable zinc ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane.
WB Description
Predicted to enable zinc ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR23292
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Drosophila melanogasterCG135112 of 9YesYes   
Drosophila melanogasterCG344452 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
B0348.118673624 of 8  
Y22D7AL.1528861413 of 8  
Y41C4A.1136854464 of 8  
Y37D8A.846962354 of 8  
C08E8.155961444 of 8  
Y37D8A.667956343 of 8  
Y40H7A.1177453363 of 8  
F36G3.389151312 of 8  
Y37D8A.2696548373 of 8  
F16F9.1108250342 of 8  
Y87G2A.18118342332 of 8  
Y87G2A.19127747312 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
45.4k45.6k45.8k46.0k46.2k46.4k46.6k46.8k
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003283.11:g.45910G>Avariant
SNP
  • intron variant
NC_003283.11:g.46365A>Gvariant
SNP
  • intron variant
NC_003283.11:g.46789G>Avariant
SNP
  • missense variant
NC_003283.11:g.46551T>Cvariant
SNP
  • intron variant
NC_003283.11:g.46831A>Tvariant
SNP
  • missense variant
NC_003283.11:g.46322A>Gvariant
SNP
  • intron variant
NC_003283.11:g.46502C>Tvariant
SNP
  • intron variant
NC_003283.11:g.46624T>Cvariant
SNP
  • intron variant
NC_003283.11:g.46227G>Avariant
SNP
  • intron variant
NC_003283.11:g.46632C>Tvariant
SNP
  • intron variant
Showing 1 - 10 of 26 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
45.4k45.6k45.8k46.0k46.2k46.4k46.6k46.8kB0348.2a.1 (B0348.2)B0348.2b.1 (B0348.2)

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available