Gene

bath-30

Species
Caenorhabditis elegans
Symbol
bath-30
Name
BTB and MATH domain containing 30
Synonyms
  • CELE_F14D2.12
  • F14D2.12
Biotype
protein coding gene
Automated Description
Not Available
WB Description
Enriched in germ line; germline precursor cell; head mesodermal cell; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including mut-2; atfs-1; and etr-1 based on microarray and RNA-seq studies. Is affected by eleven chemicals including manganese chloride; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SKP1/BTB/POZ domain superfamily; MATH domain; MATH/TRAF domain; BTB and MATH domain-containing protein; BTB/POZ domain; TRAF-like; and Phosphorylation site.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR22743
Stringency:
Additional filters to further constrain the results:
No ortholog matching your filter. Please try a less stringent filter.
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
bath-29131496935 of 8  
bath-7230662404 of 8  
sdz-28330961384 of 8  
bath-9430957394 of 8  
bath-1530960374 of 8  
bath-3631057384 of 8  
bath-13730159404 of 8  
bath-10831157374 of 8  
bath-5931056374 of 8  
bath-151031854374 of 8  
bath-41131056364 of 8  
bath-311229557394 of 8  
bath-21330556354 of 8  
bath-271432653334 of 8  
F14D2.151531754324 of 8  
bath-331628656364 of 8  
bath-251730755314 of 8  
bath-451829554354 of 8  
sdz-181926957384 of 8  
bath-262031752284 of 8  
bath-212127555384 of 8  
bath-202228454354 of 8  
bath-192329952314 of 8  
bath-242423863404 of 8  
bath-352527155354 of 8  
K05F6.102645934223 of 8  
bath-362729846255 of 8  
math-342840334214 of 8  
math-382932646273 of 8  
bath-233024853344 of 8  
bath-473127552333 of 8  
bath-383231149253 of 8  
bath-393332642253 of 8  
K08E4.73427749263 of 8  
math-423532344252 of 8  
F25H9.23632644242 of 8  
Y59E9AL.83727149302 of 8  
math-83832740252 of 8  
bath-343922149304 of 8  
math-404032739262 of 8  
math-484128146282 of 8  
btb-54229045272 of 8  
math-454332739232 of 8  
math-44434138212 of 8  
btb-194530342242 of 8  
math-34633038222 of 8  
ZK250.144728941272 of 8  
btb-144830143222 of 8  
btb-24927244262 of 8  
math-445028140282 of 8  
math-205127642262 of 8  
btb-65230041222 of 8  
btb-205327643252 of 8  
math-215429538232 of 8  
math-55526840272 of 8  
btb-85624144282 of 8  
math-285728938222 of 8  
math-235824344282 of 8  
math-255928339232 of 8  
math-16014954354 of 8  
math-246123543262 of 8  
bath-466214759393 of 8  
math-376324941242 of 8  
btb-126423244252 of 8  
C15H9.26522744252 of 8  
Y54F10AM.116617549283 of 8  
math-66719443322 of 8  
math-146819049272 of 8  
math-136919244282 of 8  
math-417017848302 of 8  
btb-167118149272 of 8  
math-227217947282 of 8  
btb-177318348262 of 8  
math-157416153302 of 8  
math-107517547282 of 8  
math-187616450302 of 8  
math-97717346272 of 8  
math-497819040252 of 8  
math-397913852372 of 8  
btb-228016150252 of 8  
btb-78115450272 of 8  
F45D11.5828565493 of 8  
btb-188314851262 of 8  
math-78413552332 of 8  
math-168513353312 of 8  
math-198615345262 of 8  
math-268714246282 of 8  
math-31889757362 of 8  
Y49F6C.2898460302 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
3.3454M3.3456M3.3458M3.3460M3.3462Mbath-30F14D2.12.1
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003280.10:g.3345362G>Avariant
SNP
  • missense variant
NC_003280.10:g.3345436C>Tvariant
SNP
  • synonymous variant
NC_003280.10:g.3345218A>Tvariant
SNP
  • 3 prime UTR variant
NC_003280.10:g.3345334A>Gvariant
SNP
  • synonymous variant
NC_003280.10:g.3345364G>Avariant
SNP
  • synonymous variant
NC_003280.10:g.3345647T>Cvariant
SNP
  • synonymous variant
NC_003280.10:g.3346140A>Gvariant
SNP
  • synonymous variant
NC_003280.10:g.3346169G>Avariant
SNP
  • missense variant
NC_003280.10:g.3346200C>Gvariant
SNP
  • missense variant
NC_003280.10:g.3345219A>Gvariant
SNP
  • 3 prime UTR variant
Showing 1 - 10 of 70 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
3.3454M3.3456M3.3458M3.3460M3.3462MF14D2.12.1 (bath-30)

Sequence Details

Transcript: Mode:

Expression

Primary Sources
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

2 interactor genes based on 2 annotations
bath-30 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
mau-8Caenorhabditis elegans
protein
  • two hybrid
PMID:14704431
protein
szy-4Caenorhabditis elegans
protein
  • two hybrid
PMID:19123269
Showing 1 - 2 of 2 rows
per page

Genetic Interactions

No data available