Gene

clec-79

Species
Caenorhabditis elegans
Symbol
clec-79
Name
C-type LECtin 79
Synonyms
  • CELE_F47C12.4
  • F47C12.4
Biotype
protein coding gene
Automated Description
Not Available
WB Description
Enriched in RICL; germ line; hypodermis; and in male based on proteomic; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including numr-2; numr-1; and mut-16 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-six chemicals including hydrogen sulfide; Ethanol; and methylmercury hydroxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR47753
Stringency:
Additional filters to further constrain the results:
No ortholog matching your filter. Please try a less stringent filter.
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
clec-73157790844 of 8  
clec-175255155415 of 8  
clec-123353056445 of 8  
clec-153458949285 of 8  
clec-151559149285 of 8  
clec-119661736224 of 8  
clec-182729841253 of 8  
clec-117818351393 of 8  
clec-164930238212 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
clec-79 (Cel)
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
3.9734M3.9736M3.9738M3.9740M3.9742M3.9744M3.9746M3.9748M3.9750M3.9752M3.9754M3.9756M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003282.8:g.3975280T>Cvariant
SNP
  • intron variant
NC_003282.8:g.3975675G>Avariant
SNP
  • 3 prime UTR variant
NC_003282.8:g.3975323C>Tvariant
SNP
  • missense variant
NC_003282.8:g.3975405C>Tvariant
SNP
  • synonymous variant
NC_003282.8:g.3974349C>Tvariant
SNP
  • intron variant
NC_003282.8:g.3973799C>Tvariant
SNP
  • synonymous variant
NC_003282.8:g.3975618C>Tvariant
SNP
  • synonymous variant
NC_003282.8:g.3974052G>Cvariant
SNP
  • missense variant
NC_003282.8:g.3973385C>Tvariant
SNP
  • synonymous variant
NC_003282.8:g.3974024G>Avariant
SNP
  • synonymous variant
Showing 1 - 10 of 42 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
3.9734M3.9736M3.9738M3.9740M3.9742M3.9744M3.9746M3.9748M3.9750M3.9752M3.9754M3.9756MF47C12.4.1 (clec-79)

Sequence Details

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Expression

Primary Sources
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
clec-79 (Cel)
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

23 interactor genes based on 23 annotations
clec-79 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
DNA
athp-1Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
btbz-2Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
dac-1Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
die-1Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
lin-54Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
mig-5Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
nhr-5Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
nhr-34Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
nhr-62Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
DNA
nhr-72Caenorhabditis elegans
protein
  • one hybrid
PMID:27777270
Showing 1 - 10 of 23 rows
per page

Genetic Interactions

No data available