Gene

Y71H2B.4

Species
Caenorhabditis elegans
Symbol
Y71H2B.4
Name
Lipoprotein
Synonyms
  • CELE_Y71H2B.4
Biotype
protein coding gene
Automated Description
Not Available
WB Description
Enriched in body wall musculature; germ line; male gonadal cell; muscle cell; and neurons based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including nuo-6; cua-1; and etr-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including hydrogen sulfide; rotenone; and D-glucose based on microarray and RNA-seq studies.
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
No data available
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
2.61900M2.61905M2.61910M2.61915M2.61920M2.61925M2.61930M2.61935M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003281.10:g.2619207C>Avariant
SNP
  • synonymous variant
NC_003281.10:g.2619258C>Tvariant
SNP
  • synonymous variant
NC_003281.10:g.2619031C>Tvariant
SNP
  • synonymous variant
NC_003281.10:g.2619098C>Tvariant
SNP
  • missense variant
NC_003281.10:g.2619151G>Avariant
SNP
  • intron variant
NC_003281.10:g.2618996A>Gvariant
SNP
  • missense variant
Showing 1 - 6 of 6 rows
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Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
2.61900M2.61905M2.61910M2.61915M2.61920M2.61925M2.61930M2.61935MY71H2B.4.1 (Y71H2B.4)

Sequence Details

Transcript: Mode:

Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

2 interactor genes based on 2 annotations
Y71H2B.4 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
F21D5.4Caenorhabditis elegans
protein
  • two hybrid
PMID:19123269
protein
rde-8Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:25635455
Showing 1 - 2 of 2 rows
per page

Genetic Interactions

No data available