Version: 8.0.0
Date: Tue Jan 28 2025
rtcb.L
Xenopus laevisXenbase:XB-GENE-974756
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

rtcb.L

Species
Xenopus laevis
Symbol
rtcb.L
Name
RNA 2',3'-cyclic phosphate and 5'-OH ligase
Synonyms
  • RNA 2',3'-cyclic phosphate and 5'-OH ligase
  • rtcb.L
Biotype
gene
Automated Description
Predicted to enable GTP binding activity; RNA ligase (GTP) activity; and metal ion binding activity. Predicted to act upstream of or within tRNA splicing, via endonucleolytic cleavage and ligation. Predicted to be located in cytoplasm. Predicted to be part of tRNA-splicing ligase complex. Orthologous to human RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase).
XBXL Description
Uncharacterized conserved protein, contains RtcB domain
https://www.xenbase.org/gene/showgene.do?method=display&geneId=974750
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
Phenotype Term
Annotation details
References
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    Disease Associations

    Cases where the expected disease association was NOT found
    Cell color indicative of annotation volume
    No data available

    Alleles and Variants

    Allele/Variant Symbol
    Allele Synonyms
    Category
    Variant
    Variant type
    Molecular consequence
    Has Disease Annotations
    Has Phenotype Annotations
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      Transgenic Alleles

      Species
      (carrying the transgene)
      Allele symbol
      Transgenic construct
      Expressed components
      Knock-down targets
      Regulatory regions
      Has Disease Annotations
      Has Phenotype Annotations
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        Models

        Model name
        Experimental condition
        Associated Human Diseases
        Associated Phenotypes
        Modifier
        Source
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          Sequence Feature Viewer

          Genome location
          Assembly version
          XL9.2
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          Data currently unavailable; sequence viewer under construction

          Sequence Details

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          Expression

          Primary Sources
          Other Sources
          None
          Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

          Molecular Interactions

          rtcb.L molecule type
          Interactor gene
          Interactor species
          Interactor molecule type
          Detection methods
          Source
          Reference
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            Genetic Interactions

            rtcb.L role
            rtcb.L genetic perturbation
            Interactor gene
            Interactor species
            Interactor role
            Interactor genetic perturbation
            Interaction type
            Phenotype or trait
            Source
            Reference
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