Version: 8.0.0Date: Tue Jan 28 2025
Gene
pcdhb
- Species
- Danio rerio
- Symbol
- pcdhb
- Name
- protocadherin b
- Synonyms
- ZPCR3
- Biotype
- protein coding gene
- Automated Description
- Orthologous to human PCDHAC1 (protocadherin alpha subfamily C, 1).
- ZFIN Description
- Not Available
- Cross References
- Additional Information
- Literature
Orthology
- Gene tree
- PANTHER:PTHR24028
Stringency:
Additional filters to further constrain the results:
| Species | Gene symbol | Count | Best | Best reverse | Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN |
|---|---|---|---|---|---|
| Homo sapiens | PCDHAC1 | 2 of 10 | Yes | Yes | ☑ ☐☐☐☐☐☑☐☐ ☐ |
| Mus musculus | Pcdhac1 | 2 of 10 | Yes | Yes | ☑ ☐☐☐☐☐☑☐☐ ☐ |
| Mus musculus | Pcdhgc3 | 2 of 10 | Yes | Yes | ☑ ☐☐☐☐☐☑☐☐ ☐ |
| Drosophila melanogaster | Cad96Cb | 2 of 10 | Yes | Yes | ☐ ☐☑☑☐☐☐☐☐ ☐ |
Links to orthology data in JBrowse by filter level: Stringent, Moderate, No filter, Best and Best Reverse
Paralogy
| Gene symbol | Rank | Alignment Length (aa) | Similarity % | Identity % | Method Count | Method Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD |
|---|---|---|---|---|---|---|
| si:ch73-233f7.3 | 1 | 710 | 91 | 80 | 4 of 8 | ☐ ☑☐☑☐☑☑☐ |
| si:ch73-233f7.1 | 2 | 743 | 64 | 44 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh10a | 3 | 772 | 60 | 38 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab7 | 4 | 712 | 62 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab9 | 5 | 703 | 62 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab12 | 6 | 704 | 62 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab6 | 7 | 703 | 62 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab10 | 8 | 703 | 62 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab2 | 9 | 703 | 62 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab11 | 10 | 706 | 62 | 41 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab3 | 11 | 703 | 61 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab5 | 12 | 703 | 61 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2aa15 | 13 | 763 | 56 | 38 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2aa1 | 14 | 758 | 56 | 38 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2g17 | 15 | 754 | 59 | 37 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdha8l | 16 | 723 | 59 | 41 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1a4 | 17 | 722 | 60 | 40 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh17 | 18 | 771 | 57 | 36 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1a3 | 19 | 719 | 59 | 41 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g2 | 20 | 721 | 60 | 39 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ab1 | 21 | 703 | 61 | 40 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh10b | 22 | 635 | 68 | 43 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g9 | 23 | 712 | 59 | 39 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g30 | 24 | 658 | 63 | 43 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g3 | 25 | 678 | 62 | 41 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2g10 | 26 | 684 | 60 | 41 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1gb2 | 27 | 712 | 59 | 38 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1gc5 | 28 | 658 | 62 | 43 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1gb9 | 29 | 712 | 59 | 38 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g11 | 30 | 713 | 59 | 38 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh18b | 31 | 760 | 54 | 36 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g26 | 32 | 666 | 61 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g1 | 33 | 678 | 60 | 40 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g33 | 34 | 660 | 62 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh19 | 35 | 727 | 56 | 36 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g29 | 36 | 669 | 60 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh18a | 37 | 757 | 55 | 35 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g18 | 38 | 670 | 61 | 40 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1gc6 | 39 | 668 | 59 | 41 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g31 | 40 | 668 | 59 | 40 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh2ac | 41 | 634 | 62 | 42 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g22 | 42 | 666 | 57 | 40 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1g32 | 43 | 627 | 61 | 41 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1b | 44 | 916 | 41 | 28 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| si:ch211-199f5.1 | 45 | 673 | 56 | 35 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh7b | 46 | 894 | 41 | 27 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh11 | 47 | 769 | 46 | 30 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh1a | 48 | 819 | 43 | 28 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh8 | 49 | 645 | 55 | 34 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh12 | 50 | 692 | 51 | 32 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh7a | 51 | 820 | 41 | 26 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
| pcdh20l | 52 | 777 | 44 | 28 | 2 of 8 | ☐ ☑☐☐☐☑☐☐ |
| si:ch73-233f7.6 | 53 | 4 of 8 | ☐ ☑☐☑☐☑☑☐ | |||
| pcdh1g13 | 54 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ | |||
| pcdh1g14 | 54 | 3 of 8 | ☐ ☑☐☐☐☑☑☐ |
Disease Associations
Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Species | Gene | Association | Disease Qualifier | Disease | Evidence | Source | Based On | References |
|---|---|---|---|---|---|---|---|---|
| No records match query. Try removing filters. | ||||||||
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Sequence Feature Viewer
- Genome location
- Chr14:2367390...2369849 (2.46 kb)
- Assembly version
- GRCz11
- Viewer Help
Data currently unavailable; sequence viewer under construction