Gene

litaf

Species
Danio rerio
Symbol
litaf
Name
lipopolysaccharide-induced TNF factor
Synonyms
  • fb12g04
  • id:ibd5018
Biotype
protein coding gene
Automated Description
Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasmic side of early endosome membrane and cytoplasmic side of plasma membrane. Predicted to be active in cytoplasmic side of late endosome membrane; cytoplasmic side of lysosomal membrane; and nucleus. Is expressed in pronephric duct and pronephric duct opening. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1C. Orthologous to human LITAF (lipopolysaccharide induced TNF factor).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR23292
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensLITAF10 of 10YesYes  
Mus musculusLitaf10 of 10YesYes  
Rattus norvegicusLitaf9 of 9YesYes   
Xenopus tropicalislitaf9 of 9YesYes   
Drosophila melanogasterCG322805 of 10YesYes  
Caenorhabditis elegansY37D8A.64 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
cdip1119442366 of 8  
si:ch211-202h22.9214951396 of 8  
si:ch211-202h22.8313952416 of 8  
si:ch211-202h22.7420041325 of 8  
si:dkeyp-75b4.8516144346 of 8  
si:ch211-157c3.4615042316 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
43.8260M43.8265M43.8270M43.8275M43.8280M43.8285M43.8290M43.8295M43.8300M43.8305M43.8310M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
bw26allele with one associated variant
deletion
  • frameshift variant
Showing 1 - 1 of 1 rows
per page

Transgenic Alleles

No data available

Models

Model name
Experimental condition
Associated Human Diseases
Associated Phenotypes
Modifier
Source
litafbw26/bw26ZFIN
Showing 1 - 1 of 1 rows
per page

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
43.8260M43.8265M43.8270M43.8275M43.8280M43.8285M43.8290M43.8295M43.8300M43.8305M43.8310Mlitaf-201 (litaf)litaf-202 (litaf)litaf-203 (litaf)rmi2-201 (rmi2)

Sequence Details

Transcript: Mode:

Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available