Gene

igsf3

Species
Danio rerio
Symbol
igsf3
Name
immunoglobulin superfamily, member 3
Synonyms
  • si:ch211-247j6.1
Biotype
protein coding gene
Automated Description
Human ortholog(s) of this gene implicated in lacrimal duct obstruction. Orthologous to human IGSF3 (immunoglobulin superfamily member 3).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR12207
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensIGSF310 of 10YesYes  
Mus musculusIgsf310 of 10YesYes  
Rattus norvegicusIgsf39 of 9YesYes   
Xenopus tropicalisigsf39 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
igsf3l1101451323 of 8  
ptgfrna293040253 of 8  
ptgfrnb384543263 of 8  
igsf8457548313 of 8  
vstm2a520835212 of 8  
vstm4b615940252 of 8  
vstm4a714440242 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
20.10M20.15M20.20M20.25M20.30M20.35M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
la029552Tg
  • la029552
allele
sa41395allele with one associated variant
point mutation
  • splice donor variant
Showing 1 - 2 of 2 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
20.10M20.15M20.20M20.25M20.30M20.35M

Sequence Details

Transcript: Mode:

Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available