Version: 8.0.0
Date: Tue Jan 28 2025
zgc:173552
Danio rerioZFIN:ZDB-GENE-080220-24
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

zgc:173552

Species
Danio rerio
Symbol
zgc:173552
Name
zgc:173552
Synonyms
None
Biotype
protein coding gene
Automated Description
Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Orthologous to several human genes including H3C1 (H3 clustered histone 1); H3C10 (H3 clustered histone 10); and H3C11 (H3 clustered histone 11).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR11426
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensH3C64 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C24 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C84 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C124 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C44 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C74 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C104 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C114 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C34 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3C14 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Homo sapiensH3-73 of 10NoYes☑ ☐☐☑☑☐☐☐☐ ☐
Mus musculusH3c114 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Mus musculusH3c84 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Mus musculusH3c14 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Mus musculusH3c104 of 10YesYes☑ ☐☐☑☑☐☑☐☐ ☐
Rattus norvegicusH3c14 of 9YesYes☑ ☐☐☑☑☐☑☐☐  
Rattus norvegicusHist1h2ail14 of 9YesYes☑ ☐☐☑☑☐☑☐☐  
Rattus norvegicusHist1h3b4 of 9YesYes☑ ☐☐☑☑☐☑☐☐  
Caenorhabditis eleganshis-457 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-67 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-497 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-257 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-27 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-327 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-557 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-177 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-597 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-637 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-407 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-137 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-427 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-97 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Caenorhabditis eleganshis-277 of 9YesYes☑ ☐☑☑☑☑☑☐☑  
Saccharomyces cerevisiaeHHT24 of 9YesNo☐ ☐☑☑☐☑☐☐☑  
Saccharomyces cerevisiaeHHT14 of 9YesNo☐ ☐☑☑☐☑☐☐☑  

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
hist2h3ca1113699997 of 8☐ ☑☑☑☑☑☑☑ 
hist2h3c2136100996 of 8☐ ☑☑☑☑☐☑☑ 
h3f3c36 of 8☐ ☑☑☑☑☐☑☑ 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
Phenotype Term
Annotation details
References
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    Disease Associations

    Cases where the expected disease association was NOT found
    Must provide at least one subject
    Cell color indicative of annotation volume
    Species
    Gene
    Association
    Disease Qualifier
    Disease
    Evidence
    Source
    Based On
    References
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      Alleles and Variants

      Allele/Variant Symbol
      Allele Synonyms
      Category
      Variant
      Variant type
      Molecular consequence
      Has Disease Annotations
      Has Phenotype Annotations
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        Download all Alleles/Variants for all genes of the species

        Transgenic Alleles

        Species
        (carrying the transgene)
        Allele symbol
        Transgenic construct
        Expressed components
        Knock-down targets
        Regulatory regions
        Has Disease Annotations
        Has Phenotype Annotations
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          Models

          No data available

          Sequence Feature Viewer

          No data available

          Sequence Details

          Transcript: Mode:

          Expression

          Primary Sources
          None
          Other Sources
          Must provide at least one subject
          Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

          Molecular Interactions

          No data available

          Genetic Interactions

          zgc:173552 role
          zgc:173552 genetic perturbation
          Interactor gene
          Interactor species
          Interactor role
          Interactor genetic perturbation
          Interaction type
          Phenotype or trait
          Source
          Reference
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