Gene

si:dkey-178k16.1

Species
Danio rerio
Symbol
si:dkey-178k16.1
Name
si:dkey-178k16.1
Synonyms
  • im:7155308
Biotype
protein coding gene
Automated Description
Predicted to enable actin binding activity and structural molecule activity. Predicted to be involved in developmental process. Predicted to act upstream of or within cortical actin cytoskeleton organization. Predicted to be located in cytoskeleton. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 11. Orthologous to human EPB41L1 (erythrocyte membrane protein band 4.1 like 1).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensEPB41L18 of 10YesYes  
Mus musculusEpb41l17 of 10YesYes  
Rattus norvegicusEpb41l17 of 9YesYes   
Xenopus tropicalisepb41l13 of 9YesYes   
Drosophila melanogastercora7 of 10YesNo  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
epb41l3a1136948356 of 8  
epb41l3b2127743336 of 8  
epb41a3121940314 of 8  
epb41b4123443282 of 8  
epb41l4b583243282 of 8  
epb41l4a675643282 of 8  
epb41l5767748322 of 8  
frmd5b853046322 of 8  
frmd6969933202 of 8  
mylipa1037445282 of 8  
mylipb1137444252 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
11.88M11.90M11.92M11.94M11.96M11.98M12.00M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
sa14559allele with one associated variant
point mutation
  • stop gained
sa24269allele with one associated variant
point mutation
  • stop gained
sa10149allele with one associated variant
point mutation
  • stop gained
sa37633allele with one associated variant
point mutation
  • splice donor variant
sa29886allele with one associated variant
point mutation
  • splice acceptor variant
Showing 1 - 5 of 5 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
11.88M11.90M11.92M11.94M11.96M11.98M12.00Msi:dkey-178k16.1-003 (si:dkey-178k16.1)si:dkey-178k16.1-201 (si:dkey-178k16.1)si:dkey-178k16.1-202 (si:dkey-178k16.1)si:dkey-178k16.1-203 (si:dkey-178k16.1)si:dkey-178k16.1-205 (si:dkey-178k16.1)si:dkey-178k16.1-206 (si:dkey-178k16.1)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available