Gene

chadla

Species
Danio rerio
Symbol
chadla
Name
chondroadherin-like a
Synonyms
None
Biotype
protein coding gene
Automated Description
Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in inflammatory response and innate immune response. Predicted to act upstream of or within immune response and toll-like receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human CHADL (chondroadherin like).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR44753
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensCHADL9 of 10YesYes  
Mus musculusChadl9 of 10YesYes  
Rattus norvegicusChadl8 of 9YesYes   
Xenopus tropicalischadl7 of 9YesNo   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
chadlb177668547 of 8  
tlr22281638252 of 8  
tlr8b383037232 of 8  
igfals465441263 of 8  
tlr5b571737242 of 8  
vasnb669436223 of 8  
nrros774533222 of 8  
cd180878330192 of 8  
rxfp2b968534212 of 8  
lrrtm4l11060838232 of 8  
lrrtm11150143302 of 8  
si:ch211-180f4.11258435222 of 8  
lrrtm4l21348540252 of 8  
lingo1a1443043262 of 8  
rtn4rl2b1542440272 of 8  
rtn4rl2a1643938222 of 8  
lingo4a1741039242 of 8  
tpbgl1835539272 of 8  
tsku1928540272 of 8  
lrrc32015751302 of 8  
lrrc3b2115244302 of 8  
lrrc3ca2212750312 of 8  

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
chadla (Dre)
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
GRCz11
Viewer Help
25.109M25.110M25.111M25.112M25.113M25.114M25.115M25.116M25.117M25.118M25.119M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
sa30833allele with one associated variant
point mutation
  • stop gained
Showing 1 - 1 of 1 rows
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Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
25.109M25.110M25.111M25.112M25.113M25.114M25.115M25.116M25.117M25.118M25.119Mchadla-201 (chadla)chadla-202 (chadla)chadla-203 (chadla)

Sequence Details

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Expression

Primary Sources
None
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
chadla (Dre)
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available