Version: 8.0.0
Date: Tue Jan 28 2025
si:ch211-260e23.7
Danio rerioZFIN:ZDB-GENE-141216-158
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

si:ch211-260e23.7

Species
Danio rerio
Symbol
si:ch211-260e23.7
Name
si:ch211-260e23.7
Synonyms
  • c19orf12b1
Biotype
protein coding gene
Automated Description
Is expressed in central nervous system and somite. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 43 and neurodegeneration with brain iron accumulation 4. Orthologous to human C19orf12 (chromosome 19 open reading frame 12).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR31493
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensC19orf126 of 10YesNo☑ ☑☐☐☑☑☑☑☐ ☐
Mus musculus1600014C10Rik7 of 10YesNo☑ ☑☐☑☑☑☑☑☐ ☐
Rattus norvegicusC1h19orf126 of 9YesNo☑ ☑☐☑☑☐☑☑☐  
Xenopus tropicalisc4h19orf127 of 9YesNo☑ ☑☐☑☑☑☑☑☐  
Drosophila melanogasterCG37409 of 10YesYes☑ ☑☑☑☑☑☑☑☑ ☐
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
zgc:112052113976557 of 8☑ ☑☐☑☑☑☑☑ 
zgc:101715213878547 of 8☑ ☑☐☑☑☑☑☑ 
si:ch211-260e23.8314179596 of 8☑ ☑☐☑☑☑☐☑ 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
Phenotype Term
Annotation details
References
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    Disease Associations

    Cases where the expected disease association was NOT found
    Must provide at least one subject
    Cell color indicative of annotation volume
    Species
    Gene
    Association
    Disease Qualifier
    Disease
    Evidence
    Source
    Based On
    References
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      Alleles and Variants

      Allele/Variant Symbol
      Allele Synonyms
      Category
      Variant
      Variant type
      Molecular consequence
      Has Disease Annotations
      Has Phenotype Annotations
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        Download all Alleles/Variants for all genes of the species

        Transgenic Alleles

        Species
        (carrying the transgene)
        Allele symbol
        Transgenic construct
        Expressed components
        Knock-down targets
        Regulatory regions
        Has Disease Annotations
        Has Phenotype Annotations
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          Models

          No data available

          Sequence Feature Viewer

          Genome location
          Assembly version
          GRCz11
          Viewer Help
          Data currently unavailable; sequence viewer under construction

          Sequence Details

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          Expression

          Primary Sources
          Other Sources
          Must provide at least one subject
          Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

          Molecular Interactions

          si:ch211-260e23.7 molecule type
          Interactor gene
          Interactor species
          Interactor molecule type
          Detection methods
          Source
          Reference
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            Genetic Interactions

            si:ch211-260e23.7 role
            si:ch211-260e23.7 genetic perturbation
            Interactor gene
            Interactor species
            Interactor role
            Interactor genetic perturbation
            Interaction type
            Phenotype or trait
            Source
            Reference
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