Gene

ssuh2rs1

Species
Danio rerio
Symbol
ssuh2rs1
Name
ssu-2 homolog, related sequence 1
Synonyms
  • wu:fc17d03
  • zgc:153440
Biotype
protein coding gene
Automated Description
Acts upstream of or within odontogenesis. Predicted to be located in nucleus. Is expressed in ceratobranchial 5 tooth and gut. Orthologous to human SSUH2 (ssu-2 homolog).
ZFIN Description
Not Available
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR15852
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensSSUH25 of 10YesNo  
Mus musculusSsu24 of 10YesNo  
Rattus norvegicusSsuh24 of 9YesNo   
Xenopus tropicalisssuh25 of 9YesYes   
Xenopus tropicalisXB59564305 of 9YesYes   
Caenorhabditis elegansssu-23 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
ssuh2.2137961487 of 8  
ssuh2.4238859467 of 8  
ssuh2.1335557422 of 8  
ssuh2.3420255465 of 8  

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
Other Sources
None
Phenotype Term
Annotation details
References
ceratobranchial 5 tooth absent, abnormal
ceratobranchial 5 tooth decreased amount, abnormal
tooth placode bmp2a expression absent, abnormal
tooth placode dlx2b expression absent, abnormal
tooth placode pitx2 expression decreased amount, abnormal
tooth placode pitx2 expression spatial pattern, abnormal
Showing 1 - 6 of 6 rows
per page

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Transgenic Alleles

No data available

Models

Model name
Experimental condition
Associated Human Diseases
Associated Phenotypes
Modifier
Source
AB + MO1-ssuh2rs1
has condition:
standard conditions
  • ceratobranchial 5 tooth absent, abnormal
  • ceratobranchial 5 tooth decreased amount, abnormal
ZFIN
AB + MO2-ssuh2rs1
has condition:
standard conditions
  • ceratobranchial 5 tooth absent, abnormal
  • ceratobranchial 5 tooth decreased amount, abnormal
ZFIN
Showing 1 - 2 of 2 rows
per page

Sequence Feature Viewer

Genome location
Assembly version
GRCz11
Viewer Help
7.315M7.320M7.325M7.330M7.335M7.340M7.345M

Sequence Details

Loading...

Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available