Gene

vir-1

Species
Drosophila melanogaster
Symbol
vir-1
Name
virus-induced RNA 1
Synonyms
  • BEST:GH02216
  • CG15493
Biotype
protein coding gene
Automated Description
Involved in defense response to virus. Is expressed in several structures, including adult head; adult heart; embryonic central brain; ganglia; and midline glial cell.
FB Description
virus-induced RNA 1 (vir-1) is produced from a promoter that is induced by viral infection. It can be used as a marker of the induction of an antiviral response. Its expression is regulated by the Jak/STAT pathway.
Cross References
Additional Information
Literature

Orthology

Gene tree
Not Available
No data available
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
Other Sources
Phenotype Term
Annotation details
References
abnormal immune response
fertile
viable
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Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R6
Viewer Help
12.404M12.406M12.408M12.410M12.412M12.414M12.416M12.418M12.420M12.422M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
vir-1MI04501-GFSTF.1
  • vir-1[MI04501-GFSTF.1]
allele
vir-1e00810
  • vir-1[e00810]
allele with one associated variant
insertion
  • intron variant
vir-1EY08717
  • CG31764[EY08717]
  • CG31764EY08717
allele with one associated variant
insertion
  • 5 prime UTR variant
Yes
vir-1MI04501
  • vir-1[MI04501]
allele with one associated variant
insertion
  • intron variant
vir-1SK1
  • CG31764[SK1]
  • CG31764SK1
allele with one associated variant
vir-1KG03668
  • vir-1[KG03668]
allele with one associated variant
insertion
  • intron variant
Yes
vir-1EP1163
  • vir-1[EP1163]
allele with one associated variant
vir-1MI00981
  • vir-1[MI00981]
allele with one associated variant
insertion
  • intron variant
vir-11293-G4
  • vir-1[1293-G4]
allele with one associated variant
insertion
  • intron variant
vir-1SK2
  • CG31764[SK2]
  • CG31764SK2
allele with one associated variant
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Transgenic Alleles

Species
(carrying the transgene)
Allele symbol
Transgenic construct
Expressed components
Knock-down targets
Regulatory regions
Has Disease Annotations
Has Phenotype Annotations
Drosophila melanogastervir-1GD4936
  • UASt
Drosophila melanogastervir-1HMJ22179
  • UAS
Drosophila melanogastervir-1HMJ22494
  • UAS
Drosophila melanogastervir-1KK111921
  • UASt
Drosophila melanogastervir-1U6.NIG.sgRNA
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Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R6
Viewer Help
12.404M12.406M12.408M12.410M12.412M12.414M12.416M12.418M12.420M12.422Mvir-1-RA (vir-1)vir-1-RB (vir-1)vir-1-RC (vir-1)vir-1-RD (vir-1)vir-1-RE (vir-1)vir-1-RG (vir-1)vir-1-RH (vir-1)

Sequence Details

Transcript: Mode:
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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

20 interactor genes based on 20 annotations
vir-1 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
Act57BDrosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
Ald1Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG1695Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG7488Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG8065Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG9368Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG9581Drosophila melanogaster
protein
  • experimental knowledge based
PMID:22036573
protein
CG17544Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
CG31550Drosophila melanogaster
protein
  • two hybrid
PMID:14605208
protein
heixDrosophila melanogaster
protein
  • two hybrid
PMID:14605208
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Genetic Interactions

No data available