Gene

Elfn2

Species
Rattus norvegicus
Symbol
Elfn2
Name
extracellular leucine-rich repeat and fibronectin type III domain containing 2
Synonyms
  • Elfn2-ps1
  • extracellular leucine-rich repeat and fibronectin type III containing 2
Biotype
protein coding gene
Automated Description
Predicted to be involved in synaptic membrane adhesion. Predicted to act upstream of or within chemical synaptic transmission; establishment of protein localization; and gene expression. Predicted to be active in extracellular matrix; extracellular space; and postsynaptic density membrane. Orthologous to human ELFN2 (extracellular leucine rich repeat and fibronectin type III domain containing 2).
RGD Description
Predicted to be involved in synaptic membrane adhesion. Predicted to be active in extracellular matrix; extracellular space; and postsynaptic density membrane. Orthologous to human ELFN2 (extracellular leucine rich repeat and fibronectin type III domain containing 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR24369
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensELFN210 of 10YesYes  
Mus musculusElfn29 of 9YesYes   
Xenopus tropicaliselfn29 of 9YesYes   
Danio rerioelfn2a3 of 9YesYes   
Caenorhabditis eleganstol-12 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Elfn1187560483 of 9 
Lrig3296636222 of 9 
Lrig1380533222 of 9 
Lrig2484431183 of 9 
Chadl577931202 of 9 
Tril663832202 of 9 
Lrrc24749135232 of 9 
Lrrn3847236222 of 9 
LRRTM1948731192 of 9 
Gp1ba1041337202 of 9 
Lgi31134238242 of 9 
Lrrc261231837262 of 9 
Lrit31334236222 of 9 
Lgi11429241252 of 9 
Rtn4rl21525141272 of 9 
Cpn21619645283 of 9 
Lgi21718644272 of 9 
Chad1816949302 of 9 
Cd1801919640222 of 9 
Lgi42016645282 of 9 
Igfals2113150352 of 9 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
110.225M110.230M110.235M110.240M110.245M110.250M110.255M110.260M110.265M110.270M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051342.1:g.110266665G>Avariant
SNP
  • intron variant
NC_051342.1:g.110269900T>Cvariant
SNP
  • intron variant
NC_051342.1:g.110241253T>Cvariant
SNP
  • intron variant
NC_051342.1:g.110257239T>Cvariant
SNP
  • intron variant
NC_051342.1:g.110257665G>Avariant
SNP
  • intron variant
NC_051342.1:g.110264788G>Avariant
SNP
  • intron variant
NC_051342.1:g.110240061A>Gvariant
SNP
  • intron variant
NC_051342.1:g.110244763T>Cvariant
SNP
  • intron variant
NC_051342.1:g.110247778C>Tvariant
SNP
  • intron variant
NC_051342.1:g.110255518G>Avariant
SNP
  • intron variant
Showing 1 - 10 of 149 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
110.225M110.230M110.235M110.240M110.245M110.250M110.255M110.260M110.265M110.270M

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available