Gene

Arl1

Species
Rattus norvegicus
Symbol
Arl1
Name
ARF like GTPase 1
Synonyms
  • ADP-ribosylation factor like GTPase 1
  • ADP-ribosylation factor-like 1
Biotype
protein coding gene
Automated Description
Predicted to enable several functions, including GTP binding activity; GTPase activity; and phospholipase D activator activity. Involved in Golgi organization and Golgi vesicle transport. Located in trans-Golgi network. Orthologous to human ARL1 (ARF like GTPase 1).
RGD Description
Predicted to enable several functions, including GTP binding activity; GTPase activity; and phospholipase D activator activity. Involved in Golgi organization and Golgi vesicle transport. Located in trans-Golgi network. Orthologous to human ARL1 (ADP ribosylation factor like GTPase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; ammonium chloride.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR11711
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensARL110 of 10YesYes  
Mus musculusArl19 of 9YesYes   
Xenopus tropicalisarl18 of 9YesYes   
Danio rerioarl19 of 9YesYes   
Drosophila melanogasterArl19 of 9YesYes   
Caenorhabditis elegansarl-19 of 9YesYes   
Saccharomyces cerevisiaeARL19 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Arf1118176563 of 9 
Arf5218075573 of 9 
Arf4218075573 of 9 
Arf2318175563 of 9 
Arf3418175562 of 9 
Arf6517273563 of 9 
Arl5a618069493 of 9 
Arl5b718067483 of 9 
Trim23816669533 of 9 
Arl4a918257403 of 9 
Arl61017761393 of 9 
Arl31116666462 of 9 
Arl21219157382 of 9 
Arl141316759403 of 9 
Arl111416261403 of 9 
Arl4d1517057353 of 9 
Arl5c1615160433 of 9 
Arl8b1717460332 of 9 
Arl8a1817459332 of 9 
Arfrp11918350342 of 9 
Arl102015761342 of 9 
Arl92116056362 of 9 
Sar1b2218550282 of 9 
Arl162316652322 of 9 
Arl152418746262 of 9 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
23.120M23.122M23.124M23.126M23.128M23.130M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051342.1:g.23126550A>Gvariant
SNP
  • intron variant
NC_051342.1:g.23127962C>Tvariant
SNP
  • intron variant
NC_051342.1:g.23130254C>Tvariant
SNP
  • intron variant
NC_051342.1:g.23122794C>Tvariant
SNP
  • intron variant
NC_051342.1:g.23123355G>Avariant
SNP
  • intron variant
NC_051342.1:g.23130751G>Avariant
SNP
  • 3 prime UTR variant
NC_051342.1:g.23125346A>Gvariant
SNP
  • intron variant
NC_051342.1:g.23128718A>Cvariant
SNP
  • intron variant
NC_051342.1:g.23129196A>Gvariant
SNP
  • intron variant
NC_051342.1:g.23125021C>Tvariant
SNP
  • intron variant
Showing 1 - 10 of 80 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
23.120M23.122M23.124M23.126M23.128M23.130M

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

1 interactor gene based on 1 annotation
Arl1 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
GOLGA4Homo sapiens
protein
  • x-ray crystallography
PMID:14718928
Showing 1 - 1 of 1 rows
per page

Genetic Interactions

No data available