Species | Gene symbol | Count | Best | Best reverse | Method Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN |
---|---|---|---|---|---|
Homo sapiens | LIG1 | 9 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ |
Mus musculus | Lig1 | 9 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ |
Rattus norvegicus | Lig1 | 9 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ |
Xenopus tropicalis | lig1 | 8 of 9 | Yes | Yes | ☑ ☑☑☐☑☑☑☑☑ |
Danio rerio | lig1 | 8 of 9 | Yes | Yes | ☑ ☑☑☐☑☑☑☑☑ |
Drosophila melanogaster | DNAlig1 | 9 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ |
Caenorhabditis elegans | lig-1 | 9 of 9 | Yes | Yes | ☑ ☑☑☑☑☑☑☑☑ |
Phenotype Term | Annotation details | References |
---|---|---|
abnormal cell cycle progression in S phase | ||
abnormal cellular morphology | ||
abnormal chromosome/plasmid maintenance | ||
absent X ray resistance | ||
arrested cell cycle progression | ||
decreased chromosome/plasmid maintenance | ||
decreased resistance to chemicals | ||
decreased sporulation | ||
decreased vegetative growth | ||
haploinsufficient |
Allele/Variant Symbol | Allele Synonyms | Category | Variant | Variant type | Molecular consequence | Has Disease Annotations | Has Phenotype Annotations |
---|---|---|---|---|---|---|---|
cdc9-5004 | allele | Yes | |||||
cdc9-1-supp2 | allele | ||||||
cdc9-1-supp1 | allele | ||||||
cdc9-2 | allele | Yes | |||||
cdc9-5006 | allele | Yes | |||||
cdc9-1 | allele | Yes | |||||
cdc9-5002 | allele | ||||||
cdc9-Δ | allele | Yes | |||||
NC_001136.10:g.166634T>C | variant | SNP
| |||||
NC_001136.10:g.166895C>T | variant | SNP
|
CDC9 molecule type | Interactor gene | Interactor species | Interactor molecule type | Detection methods | Source | Reference |
---|---|---|---|---|---|---|
protein | AGTRAP | Homo sapiens | protein |
| PMID:27107014 | |
protein | AGTRAP | Homo sapiens | protein |
| PMID:27107014 | |
protein | AMF1 | Saccharomyces cerevisiae | protein |
| PMID:11805837 | |
protein | ARL6IP1 | Homo sapiens | protein |
| PMID:27107014 | |
protein | ARL6IP1 | Homo sapiens | protein |
| PMID:27107014 | |
protein | ARL6IP1 | Homo sapiens | protein |
| PMID:27107014 | |
protein | ARL6IP1 | Homo sapiens | protein |
| PMID:27107014 | |
RNA | BFR1 | Saccharomyces cerevisiae | protein |
| PMID:26524240 | |
protein | CBP1 | Saccharomyces cerevisiae | protein |
| PMID:37968396 | |
protein | CDC34 | Saccharomyces cerevisiae | protein |
| PMID:16554755 |
CDC9 role | CDC9 genetic perturbation | Interactor gene | Interactor species | Interactor role | Interactor genetic perturbation | Interaction type | Phenotype or trait | Source | Reference |
---|---|---|---|---|---|---|---|---|---|
unspecified role | ACC1 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | ACS1 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | ACS1 | Saccharomyces cerevisiae | unspecified role | positive genetic interaction (sensu BioGRID) |
| PMID:23824283 | |||
unspecified role | ADY4 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:23824283 | |||
unspecified role | AEP2 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | AFG2 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | AGE2 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 | |||
unspecified role | AIM21 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:23824283 | |||
unspecified role | AIM25 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:23824283 | |||
unspecified role | AIM34 | Saccharomyces cerevisiae | unspecified role | negative genetic interaction (sensu BioGRID) |
| PMID:27708008 |