Gene

RRP9

Species
Saccharomyces cerevisiae
Symbol
RRP9
Name
Ribosomal RNA Processing
Synonyms
  • YPR137W
Biotype
protein coding gene
Automated Description
Enables U3 snoRNA binding activity. Involved in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in nucleolus. Part of box C/D methylation guide snoRNP complex and small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein).
SGD Description
Protein involved in pre-rRNA processing; associated with U3 snRNP; component of small ribosomal subunit (SSU) processome; ortholog of the human U3-55k protein
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR19865:SF0
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensRRP98 of 9YesYes   
Mus musculusRrp99 of 9YesYes   
Rattus norvegicusRrp98 of 9YesYes   
Xenopus tropicalisrrp99 of 9YesYes   
Danio reriorrp98 of 9YesYes   
Drosophila melanogasterU3-55K9 of 9YesYes   
Caenorhabditis elegansT02H6.17 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
Other Sources
None
Phenotype Term
Annotation details
References
decreased competitive fitness
decreased resistance to chemicals
haploinsufficient
increased competitive fitness
increased resistance to chemicals
inviable
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Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
R64-5-1
Viewer Help
801.5k802.0k802.5k803.0k803.5k804.0k
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
rrp9-5001allele
Yes
rrp9-Δallele
Yes
NC_001148.4:g.802871C>Tvariant
SNP
  • synonymous variant
NC_001148.4:g.804249A>Tvariant
SNP
  • intergenic variant
NC_001148.4:g.801978T>Cvariant
SNP
  • synonymous variant
NC_001148.4:g.802797C>Avariant
SNP
  • missense variant
NC_001148.4:g.803590T>Cvariant
SNP
  • missense variant
NC_001148.4:g.801885G>Avariant
SNP
  • synonymous variant
NC_001148.4:g.804108G>Avariant
SNP
  • intergenic variant
NC_001148.4:g.801756C>Gvariant
SNP
  • synonymous variant
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Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
R64-5-1
Viewer Help
802.4k802.6k802.8k803.0k803.2k803.4k803.6k803.8k804.0kYPR137W_id001 (RRP9)YPR137W_id004 (RRP9)YPR136C_mRNA (YPR136C)

Sequence Details

Loading...

Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

143 interactor genes based on 261 annotations
RRP9 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
ATG9Saccharomyces cerevisiae
protein
  • proximity labelling technology
PMID:38958087
protein
AVO1Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:11805837
protein
BFR2Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:37968396
protein
BMH1Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:35240051
protein
BMS1Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:12150911
protein
BMS1Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:16429126
protein
BMS1Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:37968396
protein
BMS1Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:21724601
protein
BUD21Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:31115337
protein
BUD21Saccharomyces cerevisiae
protein
  • affinity chromatography technology
PMID:12150911
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Genetic Interactions

RRP9 role
RRP9 genetic perturbation
Interactor gene
Interactor species
Interactor role
Interactor genetic perturbation
Interaction type
Phenotype or trait
Source
Reference
unspecified role
AIM18Saccharomyces cerevisiae
unspecified role
negative genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
APC11Saccharomyces cerevisiae
unspecified role
negative genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
BUD21Saccharomyces cerevisiae
unspecified role
negative genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
CSI1Saccharomyces cerevisiae
unspecified role
positive genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
EMG1Saccharomyces cerevisiae
unspecified role
negative genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
ERS1Saccharomyces cerevisiae
unspecified role
negative genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
FAL1Saccharomyces cerevisiae
unspecified role
negative genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
FCF1Saccharomyces cerevisiae
unspecified role
negative genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
GNA1Saccharomyces cerevisiae
unspecified role
negative genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
unspecified role
GTR2Saccharomyces cerevisiae
unspecified role
positive genetic interaction (sensu BioGRID)
  • colony size
PMID:27708008
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