Version: 8.0.0
Date: Tue Jan 28 2025
Arcn1
Rattus norvegicusRGD:1359110
SummaryOrthologyParalogyFunction - GO AnnotationsPathwaysPhenotypesDisease AssociationsAlleles and VariantsTransgenic AllelesModelsSequence Feature ViewerSequence DetailsExpressionMolecular InteractionsGenetic Interactions
Gene

Arcn1

Species
Rattus norvegicus
Symbol
Arcn1
Name
archain 1
Synonyms
  • archain
  • coatomer subunit delta
Biotype
protein coding gene
Automated Description
Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within several processes, including Golgi vesicle transport; adult locomotory behavior; and cerebellar Purkinje cell layer maturation. Predicted to be located in COPI-coated vesicle; Golgi apparatus; and endoplasmic reticulum. Predicted to be part of COPI vesicle coat. Orthologous to human ARCN1 (archain 1).
RGD Description
Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within several processes, including Golgi vesicle transport; adult locomotory behavior; and cerebellar Purkinje cell layer maturation. Predicted to be located in COPI-coated vesicle; Golgi apparatus; and endoplasmic reticulum. Predicted to be part of COPI vesicle coat. Orthologous to human ARCN1 (archain 1); INTERACTS WITH 17beta-estradiol; 2,6-dinitrotoluene; bisphenol A.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR10121
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensARCN110 of 10YesYes☑☑☑☑☑☑☑☑☑☑  
Mus musculusArcn19 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Xenopus tropicalisarcn19 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Danio rerioarcn1a9 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Danio rerioarcn1b6 of 9NoYes☑ ☑☐☑☑☐☑☑☐  
Drosophila melanogasterδCOP9 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Caenorhabditis eleganscopd-19 of 9YesYes☑ ☑☑☑☑☑☑☑☑  
Saccharomyces cerevisiaeRET28 of 9YesYes☑ ☑☑☑☑☑☑☐☑  
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume
Species
Gene
Association
Disease Qualifier
Disease
Evidence
Source
Based On
References
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    Alleles and Variants

    Genome location
    Assembly version
    mRatBN7.2
    Viewer Help
    Data currently unavailable; sequence viewer under construction
    Allele/Variant Symbol
    Allele Synonyms
    Category
    Variant
    Variant type
    Molecular consequence
    Has Disease Annotations
    Has Phenotype Annotations
    NC_051343.1:g.45057978C>Tvariant
    SNP
    • 3 prime UTR variant
    NC_051343.1:g.45068321C>Tvariant
    SNP
    • intron variant
    NC_051343.1:g.45074123A>Gvariant
    SNP
    • intron variant
    NC_051343.1:g.45075154C>Tvariant
    SNP
    • intron variant
    NC_051343.1:g.45070457T>Cvariant
    SNP
    • intron variant
    NC_051343.1:g.45080867G>Avariant
    SNP
    • intron variant
    NC_051343.1:g.45062321A>Cvariant
    SNP
    • intron variant
    NC_051343.1:g.45067913A>Gvariant
    SNP
    • intron variant
    NC_051343.1:g.45073217T>Cvariant
    SNP
    • intron variant
    NC_051343.1:g.45073994T>Cvariant
    SNP
    • intron variant
    Showing 1 - 10 of 65 rows
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    View detailed Alleles/Variants information
    Download all Alleles/Variants for all genes of the species

    Transgenic Alleles

    No data available

    Models

    No data available

    Sequence Feature Viewer

    Genome location
    Assembly version
    mRatBN7.2
    Viewer Help
    Data currently unavailable; sequence viewer under construction

    Sequence Details

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    Expression

    Primary Sources
    None
    Other Sources
    Must provide at least one subject
    Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

    Molecular Interactions

    2 interactor genes based on 3 annotations
    Arcn1 molecule type
    Interactor gene
    Interactor species
    Interactor molecule type
    Detection methods
    Source
    Reference
    protein
    		InsrRattus norvegicus
    protein
    • affinity chromatography technology
    		PMID:25687571
    protein
    		InsrRattus norvegicus
    protein
    • affinity chromatography technology
    		PMID:25687571
    protein
    		Sumo3Rattus norvegicus
    protein
    • affinity chromatography technology
    		PMID:22082260
    Showing 1 - 3 of 3 rows
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    Genetic Interactions

    No data available