Gene

copd-1

Species
Caenorhabditis elegans
Symbol
copd-1
Name
COat Protein complex 1, Delta subunit 1
Synonyms
  • C13B9.3
  • CELE_C13B9.3
Biotype
protein coding gene
Automated Description
Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in COPI-coated vesicle membrane and Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in body wall musculature; intestine; nervous system; pharynx; and reproductive system. Orthologous to human ARCN1 (archain 1).
WB Description
C13B9.3 encodes a delta subunit of the coatomer (COPI) complex; in mass RNAi assays, C13B9.3 is required for fertility and general health.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR10121
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensARCN19 of 9YesYes   
Mus musculusArcn19 of 9YesYes   
Rattus norvegicusArcn19 of 9YesYes   
Xenopus tropicalisarcn19 of 9YesYes   
Danio rerioarcn1a9 of 9YesYes   
Danio rerioarcn1b9 of 9YesYes   
Drosophila melanogasterδCOP9 of 9YesYes   
Saccharomyces cerevisiaeRET29 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

No paralogs for the gene.

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
WBcel235
Viewer Help
6.6228M6.6230M6.6232M6.6234M6.6236M6.6238M6.6240M6.6242M6.6244M6.6246M6.6248M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_003281.10:g.6624752G>Avariant
SNP
  • intron variant
NC_003281.10:g.6624355C>Tvariant
SNP
  • missense variant
NC_003281.10:g.6624488G>Avariant
SNP
  • synonymous variant
NC_003281.10:g.6624685G>Avariant
SNP
  • missense variant
NC_003281.10:g.6624848C>Tvariant
SNP
  • synonymous variant
NC_003281.10:g.6623471T>Cvariant
SNP
  • intron variant
NC_003281.10:g.6624015G>Avariant
SNP
  • missense variant
NC_003281.10:g.6624135C>Tvariant
SNP
  • missense variant
NC_003281.10:g.6624421T>Cvariant
SNP
  • missense variant
NC_003281.10:g.6623708C>Tvariant
SNP
  • missense variant
Showing 1 - 10 of 25 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
WBcel235
Viewer Help
6.6228M6.6230M6.6232M6.6234M6.6236M6.6238M6.6240M6.6242M6.6244M6.6246M6.6248MC13B9.3.1 (copd-1)C13B9.2.1 (C13B9.2)C13B9.2.2 (C13B9.2)C13B9.2.3 (C13B9.2)

Sequence Details

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Expression

Primary Sources
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

16 interactor genes based on 17 annotations
copd-1 molecule type
Interactor gene
Interactor species
Interactor molecule type
Detection methods
Source
Reference
protein
alg-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:26351692
protein
csr-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:32015436
protein
csr-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:34108460
protein
dep-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:28135265
protein
dlg-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:27506200
protein
endu-2Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:37443152
protein
glh-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:31506335
protein
gras-1Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:36809245
protein
igdb-2Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:28803967
protein
lin-53Caenorhabditis elegans
protein
  • affinity chromatography technology
PMID:31397537
Showing 1 - 10 of 17 rows
per page

Genetic Interactions

No data available