Gene

Samt4

Species
Rattus norvegicus
Symbol
Samt4
Name
spermatogenesis associated multipass transmembrane protein 4
Synonyms
  • hypothetical protein LOC685774
  • LOC685774
Biotype
protein coding gene
Automated Description
Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be active in bicellular tight junction and plasma membrane.
RGD Description
Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be active in bicellular tight junction and plasma membrane; INTERACTS WITH bisphenol A; Cuprizon.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR12002
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Mus musculusSamt49 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Samt3123382684 of 9 
Samt1223382693 of 9 
Samt2l2322975593 of 9 
Samt2l1422974573 of 9 
Samt2l3523172573 of 9 
Cldn34e722939223 of 9 
Cldn34a823241222 of 9 
Cldn14922938212 of 9 
Cldn34b31022440202 of 9 
Cldn21121140212 of 9 
Cldn34d1220641212 of 9 
Cldn191319043242 of 9 
Cldn81421038222 of 9 
Cldn11519142242 of 9 
Cldn34b1622039182 of 9 
Cldn34b41721538202 of 9 
Cldn31819442222 of 9 
Cldn41919340232 of 9 
Cldn62019142222 of 9 
Cldn92119142232 of 9 
Cldn152221535212 of 9 
Cldn102319338212 of 9 
Cldn34c42419138212 of 9 
Cldn52519039202 of 9 
Cldn242617740232 of 9 
Cldn182720035202 of 9 
Cldn72817437222 of 9 
Cldn202917139222 of 9 
Cldn223016540222 of 9 
Cldn233115241222 of 9 
Cldn113217133202 of 9 
Cldn163315340172 of 9 
Cldn173414438222 of 9 
Cldn25358942282 of 9 

Function - GO Annotations

No function available for that gene

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
all annotationsall disease by infectious agentbacterial infectious diseasefungal infectious diseaseparasitic infectious diseaseviral infectious diseaseall disease of anatomical entitycardiovascular system diseasecentral nervous system diseaseendocrine system diseasegastrointestinal system diseasehematopoietic system diseaseimmune system diseaseintegumentary system diseasemusculoskeletal system diseaseperipheral nervous system diseasereproductive system diseaserespiratory system diseasesensory system diseasethoracic diseaseurinary system diseaseall disease of cellular proliferationbenign neoplasmcancerpre-malignant neoplasmall genetic diseasechromosomal diseasemonogenic diseasepolygenic diseaseall other diseasedisease of mental healthdisease of metabolismphysical disordersyndrome
Samt4 (Rno)
Samt4 (Mmu)
Cell color indicative of annotation volume
No data available

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
22.6770M22.6775M22.6780M22.6785M22.6790M22.6795MSamt4ENSRNOT00000029966.3NM_001408892.1XM_039100384.2
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
Samt4Tn(pb-Bhr7)1Wmukf
  • Samt4Tn(pb-Bhr7)1Wmukf
  • spermatogenesis associated multipass transmembrane protein 4, Bhr7 transposon-incuded mutant 1, Wmukf)
allele
NC_051356.1:g.22676874G>Avariant
SNP
  • 3 prime UTR variant
NC_051356.1:g.22677719A>Tvariant
SNP
  • intron variant
NC_051356.1:g.22679321T>Avariant
SNP
  • intron variant
NC_051356.1:g.22678358C>Tvariant
SNP
  • intron variant
NC_051356.1:g.22679569G>Avariant
SNP
  • 5 prime UTR variant
Showing 1 - 6 of 6 rows
per page

Transgenic Alleles

No data available

Models

Model name
Experimental condition
Associated Human Diseases
Associated Phenotypes
Modifier
Source
WKY-Tg(Samt4Tn(pb-Bhr7)1Wmukf)RGD
Showing 1 - 1 of 1 rows
per page

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
22.6770M22.6775M22.6780M22.6785M22.6790M22.6795MENSRNOT00000029966.3 (Samt4)NM_001408892.1 (Samt4)XM_039100384.2 (Samt4)

Sequence Details

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Expression

Primary Sources
None
Other Sources
all annotationsall anatomical structuresalimentary part of gastrointestinal systemchemosensory systemcirculatory systemendocrine systemexocrine systemhemolymphoid systemhepatobiliary systemintegumental systemmechanosensory systemmusculoskeletal systemnervous systemrenal systemreproductive systemrespiratory systemsensory systemvestibulo-auditory systemvisual systemendodermectodermmesodermmesenchymeadipose tissueappendageentire extraembryonic componentimaginal precursorpharyngeal archotherall stagesembryo stagepost embryonic, pre-adultpost-juvenile adult stageall cellular componentsextracellular regionplasma membranesynapsecell junctioncell projectioncytoplasmic vesicleendosomevacuolegolgi apparatusendoplasmic reticulumcytosolmitochondrionnucleuschromosomecytoskeletonprotein-containing complexother locations
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available