Gene

Zranb3

Species
Rattus norvegicus
Symbol
Zranb3
Name
zinc finger RANBP2-type containing 3
Synonyms
  • DNA annealing helicase and endonuclease ZRANB3
  • LOC304761
Biotype
protein coding gene
Automated Description
Predicted to enable ATP-dependent DNA/DNA annealing activity; DNA endonuclease activity; and K63-linked polyubiquitin modification-dependent protein binding activity. Predicted to be involved in several processes, including DNA metabolic process; DNA rewinding; and negative regulation of DNA recombination. Predicted to be located in nucleoplasm. Predicted to be active in nuclear replication fork. Orthologous to human ZRANB3 (zinc finger RANBP2-type containing 3).
RGD Description
Predicted to enable ATP-dependent DNA/DNA annealing activity; DNA endonuclease activity; and K63-linked polyubiquitin modification-dependent protein binding activity. Predicted to be involved in several processes, including DNA metabolic process; DNA rewinding; and negative regulation of DNA recombination. Predicted to be located in nucleoplasm. Predicted to be active in nuclear replication fork. Orthologous to human ZRANB3 (zinc finger RANBP2-type containing 3); INTERACTS WITH bisphenol A; endosulfan; flutamide.
Cross References
Additional Information
Literature

Orthology

Gene tree
PANTHER:PTHR45766
Stringency:
Additional filters to further constrain the results:
Species Gene symbol Count Best Best reverse
Method
Ensembl ComparaHGNCHieranoidInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidXenbaseZFIN
Homo sapiensZRANB310 of 10YesYes  
Mus musculusZranb39 of 9YesYes   
Danio reriozranb38 of 9YesYes   
Links to orthology data in JBrowse by filter level: Stringent,  Moderate,  No filter,  Best and Best Reverse

Paralogy

Gene symbolRank Alignment Length (aa) Similarity %Identity %Method Count
Method
Ensembl ComparaHGNCInParanoidOMAOrthoFinderOrthoInspectorPANTHERPhylomeDBSonicParanoidSGD
Chd11127937212 of 9 
Chd62130634212 of 9 
Chd23117736222 of 9 
Ercc64113338222 of 9 
Ercc6l5120334212 of 9 
Chd46117035222 of 9 
Chd57110537212 of 9 
Smarca48108937212 of 9 
Chd1l9102838232 of 9 
Chd310101736222 of 9 
Smarcal11160055383 of 9 
Smarca21292438242 of 9 
Smarca11399936212 of 9 
Chd71489537222 of 9 
Smarca51584539232 of 9 
Chd91671239242 of 9 
Btaf11767039242 of 9 
Chd81865639252 of 9 
Smarcad11962441252 of 9 
Rad54b2061140252 of 9 

Function - GO Annotations

Pathways

No data available

Phenotypes

Primary Sources
None
Other Sources
None
No data available

Disease Associations

Cases where the expected disease association was NOT found
Must provide at least one subject
Cell color indicative of annotation volume

Alleles and Variants

Genome location
Assembly version
mRatBN7.2
Viewer Help
39.46M39.48M39.50M39.52M39.54M39.56M39.58M
Variant Types and ConsequencesOnly variants associated to alleles are shown in the graphics above. See all variants in JBrowse.
Allele/Variant Symbol
Allele Synonyms
Category
Variant
Variant type
Molecular consequence
Has Disease Annotations
Has Phenotype Annotations
NC_051348.1:g.39493488T>Gvariant
SNP
  • intron variant
NC_051348.1:g.39441320G>Avariant
SNP
  • 3 prime UTR variant
NC_051348.1:g.39462224C>Tvariant
SNP
  • intron variant
NC_051348.1:g.39463312A>Gvariant
SNP
  • intron variant
NC_051348.1:g.39464015A>Gvariant
SNP
  • intron variant
NC_051348.1:g.39465549T>Gvariant
SNP
  • intron variant
NC_051348.1:g.39466224G>Avariant
SNP
  • intron variant
NC_051348.1:g.39466392G>Avariant
SNP
  • intron variant
NC_051348.1:g.39467416G>Tvariant
SNP
  • intron variant
NC_051348.1:g.39479315T>Avariant
SNP
  • intron variant
Showing 1 - 10 of 542 rows
per page

Transgenic Alleles

No data available

Models

No data available

Sequence Feature Viewer

Genome location
Assembly version
mRatBN7.2
Viewer Help
39.46M39.48M39.50M39.52M39.54M39.56M39.58MENSRNOT00000005355.9 (Zranb3)XM_006249701.5 (Zranb3)XM_008769510.4 (Zranb3)XM_039091286.2 (Zranb3)ENSRNOT00000072705.2 (Mir3473)NR_106676.1 (Mir3473)XM_039091287.1 (Cmc1l1)

Sequence Details

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Expression

Primary Sources
None
Other Sources
Must provide at least one subject
Cell color indicative of annotation volume; red slash indicates species lacks structure or developmental stage.

Molecular Interactions

No data available

Genetic Interactions

No data available